Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0409
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5...    31   1.1  
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    30   1.9  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    30   1.9  
At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5...    29   3.3  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    29   4.4  
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa...    28   5.8  
At5g40450.1 68418.m04905 expressed protein                             28   7.6  
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    28   7.6  

>At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5) /
           HD-ZIP transcription factor 5 identical to
           homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein
           ATHB-5) (SP:P46667) [Arabidopsis thaliana]
          Length = 312

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 250 RRYELLESTLDELNSALDFLERKNDDIHQQLKEL 351
           R Y +L+S  D L    D L+R ND +  Q+KEL
Sbjct: 131 RDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKEL 164


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 265 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RNA 429
           LE    +L+SA   +E KN D+      LLQ+N+   +E+RE  ++++  N + A
Sbjct: 802 LEVLAQDLDSAESTIESKNSDML-----LLQNNLKELEELREMKEDIDRKNEQTA 851


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 265 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RNA 429
           LE    +L+SA   +E KN D+      LLQ+N+   +E+RE  ++++  N + A
Sbjct: 801 LEVLAQDLDSAESTIESKNSDML-----LLQNNLKELEELREMKEDIDRKNEQTA 850


>At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5) /
           HD-ZIP protein 5 / HD-ZIP protein (HB-1) identical to
           homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
           (HD-ZIP protein ATHB-1) GB:Q02283 [Arabidopsis thaliana]
          Length = 272

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 250 RRYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 393
           R Y+LL+ST D+L S  D +   ND +  ++  L +  +  +QE   E
Sbjct: 127 RDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTE-KLQGKQETANE 173


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 586 CIIIHLRYLSMNNYLSCLHHLNVISCIFMSIGMNNNI*LSIVHRK 720
           C + H  Y S+++ L C HH N    +FM  G   ++  +  HR+
Sbjct: 136 CTLTHSSYASLDSVLYCRHHFNQ---LFMEKGNYAHVLQAANHRR 177


>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/65 (20%), Positives = 30/65 (46%)
 Frame = +1

Query: 247 NRRYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RN 426
           ++ +  L+S +       + + R+ DDI  +L +  +    + +E+ E NKE+      +
Sbjct: 251 DKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELMELNKELEELGSES 310

Query: 427 ANTAL 441
              A+
Sbjct: 311 VEAAI 315


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 33/53 (62%)
 Frame = +1

Query: 268  ESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RN 426
            E +++E N+  + ++ +     +Q +E  Q+NI +++E+REE KE+N  +  N
Sbjct: 2681 EVSVEEKNNTSENIDHEAAKEIEQ-EEGKQTNI-VKEEIREEEKEINQESFNN 2731


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 253 RYELLESTLDELNSALDFLERKNDDIHQQLKELLQ 357
           R+  L  T+DEL+S +  LE ++DD+   L ++++
Sbjct: 552 RFIFLRYTIDELSSLVRALEGESDDLKAWLSKVME 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,473
Number of Sequences: 28952
Number of extensions: 231419
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)