Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    29   0.62 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   2.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.6  

>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 34  GAICMELLTKQGWSSAYTVEAVIMQIAATL 123
           GAIC+++L  Q WS  YT+++ ++ + + L
Sbjct: 86  GAICLDILKDQ-WSPVYTMKSALISLQSLL 114


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 487 APHLIQN-ITTYNNTRTILAKRPFIFSTYIKTSRAYRQT 374
           A  L+Q  + TYN   TIL  RP+ +  ++  S   RQ+
Sbjct: 714 AQRLLQKEVITYNEVETILGPRPYAYK-HLNISELMRQS 751


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 399 KRVAHT--DRQTLWKC*RAVSYHSY*HGSYVGRNKSLHSAPQFQLPILFRSVN 247
           K V H   D+ T++     V +  + H  Y G+   +  AP  ++P+L R  N
Sbjct: 738 KPVTHPSIDKITIYLADDEVYFDLHDHTEYAGKGHQVVPAPLGRVPVLLRGGN 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,375
Number of Sequences: 5004
Number of extensions: 58973
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)