Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960           34   0.091
06_01_0048 + 436156-436406,436514-436693,436725-437133                 29   2.6  
01_01_1187 + 9444742-9445317                                           29   3.4  
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    29   4.5  

>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
          Length = 127

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 16  GYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATL 123
           GYV   G+IC+++L  Q WS  Y V A++  I + L
Sbjct: 54  GYVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLL 88


>06_01_0048 + 436156-436406,436514-436693,436725-437133
          Length = 279

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 39  DMYGAINEARLVIRVHCGSGDHADSRHPGEGQGSDPV 149
           ++  A   A  V R  CG GDH   RH G G+ ++ V
Sbjct: 131 ELVAAAASAAAVARSGCGCGDHGRRRHGGLGRLAEGV 167


>01_01_1187 + 9444742-9445317
          Length = 191

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 34  GAICMELLTKQGWSSAYTVEAVIMQIAATL 123
           G IC+++L  + WSSAY V  +++ I + L
Sbjct: 128 GNICLDILQDK-WSSAYDVRTILLSIQSLL 156


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 240 MAGSHSERGWVIGTAERCVTICYAQRNYHVNMSDS 344
           ++ ++S  GW IG A     I  A RN HV ++DS
Sbjct: 228 LSKTYSVTGWRIGWACAPANIASAIRNIHVKLTDS 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,949
Number of Sequences: 37544
Number of extensions: 397808
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)