Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   1e-18
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   8e-15
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   29   3.5  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_27638| Best HMM Match : Baculo_IE-1 (HMM E-Value=4)                 28   6.0  
SB_54184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 43/66 (65%), Positives = 49/66 (74%)
 Frame = +1

Query: 1   PIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSAHQSCFTDS 180
           P+I  GYVL GGAICMELLT QGWSSAYT+EAVI+QI+ATLVKGKARI F   +     S
Sbjct: 595 PVIQAGYVLSGGAICMELLTPQGWSSAYTIEAVIVQISATLVKGKARINFQDTKKVLGLS 654

Query: 181 VQSGPC 198
            +   C
Sbjct: 655 FKMAAC 660


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +1

Query: 1   PIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARI 144
           P I GG+VL GGAICMELLT +GWSSAYTVEAV++Q +A +VKGK RI
Sbjct: 813 PRIEGGFVLDGGAICMELLTPKGWSSAYTVEAVVLQFSAAVVKGKGRI 860



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 182 YSLARAQQSFKCLVQIHEKNGWFTLRKRMG 271
           +S   A+ ++K LV+ H+K GW T  K  G
Sbjct: 868 FSKKEAESAYKRLVKTHDKYGWVTPPKAEG 897


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +1

Query: 43  CMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSAHQSCFTDSVQSGPCT 201
           C+  LTK G    Y V  VIMQ      K  A +  S+  SC+ D+   G CT
Sbjct: 50  CLNQLTKLGKPFKYIVTCVIMQ------KNGAGLHTSS--SCYWDNTTDGSCT 94


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 386  CATRFYVCAEYEWTFCEYCTCIIVSGN 466
            CA  F +CAE+++  C  C   + +GN
Sbjct: 962  CAVSFCICAEFKYHVCIECRGCVSTGN 988


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 443 YNTRKTSIHIQHIHKNESRIQTDKRYGNVDAQSAITHI-NMVVTLGVTNRYTAL 285
           Y TR  ++H+ H++     +     Y  + A   +TH+ N +V + VT+ Y  L
Sbjct: 178 YITRLVAVHVTHLYNRLVAVHVTHLYNRLVAVH-VTHLYNRLVAVHVTHLYNRL 230



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -3

Query: 449 YTYNTRKTSIHIQHIHKNESRIQTDKRYGNVDAQSAITHI-NMVVTLGVTNRYTALRSSN 273
           + YN R  ++H+ H++     +     Y  + A   +TH+ N +V + VT+ Y  + +++
Sbjct: 213 HLYN-RLVAVHVTHLYNRLVAVHVTHLYNRLVA-GHVTHLYNRLVAVHVTHSYNRMVAAH 270

Query: 272 YPSSFG-V*TSHFSHV 228
              S+  +   H +H+
Sbjct: 271 VTHSYNRLVAVHVTHL 286



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 449 YTYNTRKTSIHIQHIHKNESRIQTDKRYGNVDAQSAITHI-NMVVTLGVTNRYTAL 285
           + YN R  ++H+ H++     +     Y  + A + +TH+ N VV + VT+ Y  L
Sbjct: 345 HLYN-RLVAVHVTHLYNRLVAVHVTHLYNRLVA-AHVTHLYNRVVAVHVTHLYNRL 398


>SB_27638| Best HMM Match : Baculo_IE-1 (HMM E-Value=4)
          Length = 288

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 386 CATRFYVCAEYEWTFCEYCTCIIVSGNVLNQVRGVNERLYKLIGRKIKVYCVTFFVIINF 565
           C   +Y+   + W FC  CT   VS +V N    ++ R   ++   +++Y   F      
Sbjct: 191 CKGLYYILKGWRWLFCA-CTTPTVS-SVWNASLDLSSRTAAMLCYYVELYNACFCCFSGT 248

Query: 566 SLNVN 580
           S++VN
Sbjct: 249 SVDVN 253


>SB_54184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 121 LVKGKARIQFSAHQSCFTDSVQSGPCTAELQMSC--SDT*EKWLVHTPKE 264
           LVKGKARI  ++ +S  +++V+    T  LQ  C  S   E W++    E
Sbjct: 60  LVKGKARIVLASSESFVSEAVKLLLGTEGLQRECRRSFACEMWVIFLTSE 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,517
Number of Sequences: 59808
Number of extensions: 465766
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)