Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical pr...    86   3e-17
AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin con...    86   3e-17
U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine rece...    34   0.081
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    30   1.3  
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    30   1.7  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical p...    27   9.3  
AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL021176-3|CAA15976.2|  316|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical
           protein F25H2.8 protein.
          Length = 387

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/59 (69%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   PIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSA-HQSCFT 174
           P I+ G+VL GGAICMELLTKQGWSSAY++E+ I+QIAATLVKG+ARI F A H S ++
Sbjct: 301 PHINQGFVLGGGAICMELLTKQGWSSAYSIESCILQIAATLVKGRARISFDAKHTSTYS 359



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +2

Query: 182 YSLARAQQSFKCLVQIHEKNGWFTLRKRMG 271
           YS+ARAQQSFK L QIH K+GW+T  K  G
Sbjct: 358 YSMARAQQSFKSLQQIHAKSGWYTPPKTEG 387


>AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin
           conjugating enzyme UBC-25 protein.
          Length = 387

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/59 (69%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   PIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSA-HQSCFT 174
           P I+ G+VL GGAICMELLTKQGWSSAY++E+ I+QIAATLVKG+ARI F A H S ++
Sbjct: 301 PHINQGFVLGGGAICMELLTKQGWSSAYSIESCILQIAATLVKGRARISFDAKHTSTYS 359



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +2

Query: 182 YSLARAQQSFKCLVQIHEKNGWFTLRKRMG 271
           YS+ARAQQSFK L QIH K+GW+T  K  G
Sbjct: 358 YSMARAQQSFKSLQQIHAKSGWYTPPKTEG 387


>U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 30 protein.
          Length = 324

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 392 TRFYVCAEYEWTFCEYCTCIIVSGNVLNQVRGVNERLYKLIGRKIKVYCVTFFVIINFSL 571
           T F V   Y W     C+  +  G+V   V+ +N+RL K+I  ++ +    F  +I F+ 
Sbjct: 185 TAFLVVVAYIWIRETLCSFAVKMGSVKKDVKNLNKRLVKVINFQVFLPSFIFLGVITFAS 244

Query: 572 NVNRMVALE 598
                ++ E
Sbjct: 245 MFTSKISYE 253


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 392 TRFYVCAEYEW---TFCEYCTCIIVSGNVLNQVRGVNERLYKLIGRKIKVYCVTFFVIIN 562
           T F V   Y W   T C Y T +   G +   V+  N+RL K+I  ++ +    F  +I 
Sbjct: 183 TAFLVIVAYIWIKETLCSYATKM---GAIKKDVKNFNKRLVKVINFQVFLPSFIFLGVIT 239

Query: 563 FS 568
           F+
Sbjct: 240 FA 241


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 377 LSVCATRFYVCAEYEWTFCEYCTCIIVSGNVLNQVRGVNERLYKLIGRKIKVYCVTFFVI 556
           + + AT   V   Y W     C   I  G V N ++ +N+RL K+I  ++ +    F  +
Sbjct: 180 IQLFATAVLVVIAYIWIRETLCGFAIKMGAVKNDMKNLNKRLVKVITFQVFLPSFIFLGV 239

Query: 557 INFS 568
           I F+
Sbjct: 240 IIFA 243


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 591 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 632


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 461 HLQ*YTYNTRKTSIHIQHIH-KNESRIQTDKRYGN-VDAQSAITHINMVVTLGVTNRY 294
           H+     NT  T I ++    +NE+ I    +Y + VDA++A+  +N  V  G+ N Y
Sbjct: 27  HIDNLICNTYPTPIQLRKSPTRNETSINAFYQYSSFVDARNALRILNGAVVPGMENHY 84


>Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 591 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 632


>Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 LTARQHFHNVCLSVCATRFYVCAE-YEWTFCEYCTCIIVSGNVL 472
           L A++H H VC S    R +   E ++   C  CTC +  G+VL
Sbjct: 525 LAAQKHEHTVCQSPGTGRLFTDGETWQLAPCVSCTCRV--GHVL 566


>AL021176-3|CAA15976.2|  316|Caenorhabditis elegans Hypothetical
           protein Y43E12A.3 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 470 LNQVRGVNERLYKLIGRKIKVYCVTFFVIINFSLNVNRMV 589
           +NQ +G+  R Y    R I ++  T  ++     +VNRM+
Sbjct: 130 INQSKGIQLRNYIDFARPIPIFSDTIVLVDGVKFHVNRMI 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,730
Number of Sequences: 27780
Number of extensions: 345424
Number of successful extensions: 864
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)