Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    29   0.054
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.12 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
 Frame = +3

Query: 93  SGDHADSRHPGEGQGSDPVQCPPKLFHRLSTVWPVHSRASNVLFRYMRKMAGSHSERGWV 272
           SG  + S  PG G+  DP + PP    R+S V   ++   N   RY     G    +  V
Sbjct: 387 SGLVSGSSTPGTGREHDPAKFPPSF--RISRVAAYNTYGRNAGLRY----RGPKQNKPKV 440

Query: 273 IGTAERCVTICYAQ--RNYHVNMSDS*LRVNISITFVCLYARLVFMYVL 413
           +    R  +I      +   VN+ D   R+   ++F+   A     YVL
Sbjct: 441 LHAIRRGASILRVSMPKIKDVNIIDKYSRIIFPVSFMLFNAIYWIFYVL 489


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 51  AINEARLVIRVHCGSGDHADSRHPGEGQGSDP 146
           A  E  L +R+H G G + D+RH      S P
Sbjct: 250 ASGELELTLRIHRGGGTNTDARHLFRTASSTP 281


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 475 IQNITTYNNTRTILAKRPFIFSTYIKTSRAYRQTNVMEML 356
           +  IT +   R I    PFI  T  K SRA +   V+ +L
Sbjct: 142 VLTITAFTVERYIAICHPFISHTMSKLSRAVKFIIVIWLL 181



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 315 VGRNKSLHSAPQFQL 271
           + RNKS+H+A  + L
Sbjct: 78  IARNKSMHTATNYYL 92


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 212 KCLVQIHEKNGWFTLRKRMGNWNCGALCNDLLRP 313
           K L  I E+    ++R++   WN     +DL+RP
Sbjct: 11  KALAFIAEEGYVPSMREKFLGWNVPPEYSDLVRP 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 IMQIAATLVKGKARIQFSAHQSCFTDSVQSG 192
           + Q++ TL+  +AR++ S    C  ++   G
Sbjct: 265 VRQVSGTLIIREARVEDSGKYLCIVNNSVGG 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,629
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)