Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0408
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20160.1 68416.m02556 geranylgeranyl pyrophosphate synthase, ...    31   0.93 
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)...    29   2.1  
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)...    29   2.8  
At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase, ...    29   3.7  
At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase, ...    29   3.7  
At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase, ...    29   3.7  
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ...    28   4.9  
At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase (...    28   6.5  
At2g33610.1 68415.m04119 SWIRM domain-containing protein / DNA-b...    27   8.6  

>At3g20160.1 68416.m02556 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:2578821; similar to geranyl geranyl pyrophosphate
           synthase GB:BAA23157 [Arabidopsis thaliana]
          Length = 344

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 113 AICMITASTVYADDQPCFVNSSIHIAPPTN 24
           AI M+ AS++  DD PC  N S+    PTN
Sbjct: 118 AIEMLHASSLILDDLPCMDNDSLRRGKPTN 147


>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
           nearly identical to ubiquitin-conjugating enzyme UBC20
           [Arabidopsis thaliana] GI:22530867; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 180

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 28  VGGAICMELLTKQGWSSAYTVEAVIMQIAATL 123
           V G IC+++L  + WSSAY V  +++ I + L
Sbjct: 114 VYGNICLDILQDK-WSSAYDVRTILLSIQSLL 144


>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
           nearly identical to ubiquitin-conjugating enzyme UBC19
           [Arabidopsis thaliana] GI:22530865; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 181

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 34  GAICMELLTKQGWSSAYTVEAVIMQIAATL 123
           G IC+++L  + WSSAY V  +++ I + L
Sbjct: 117 GNICLDILQDK-WSSAYDVRTILLSIQSLL 145


>At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to SP|Q43133
           Geranylgeranyl pyrophosphate synthetase, chloroplast
           precursor (GGPP synthetase) (GGPS) [Includes:
           Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)] {Sinapis alba};
           contains Pfam profile PF00348: Polyprenyl synthetase
          Length = 360

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 137 ALPFTRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 24
           A   +   A+ MI  S++  DD PC  N+ +    PTN
Sbjct: 125 ATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTN 162


>At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to SP|P34802
           Geranylgeranyl pyrophosphate synthetase, chloroplast
           precursor (GGPP synthetase) (GGPS) [Includes:
           Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)] {Arabidopsis
           thaliana}; contains Pfam profile PF00348: Polyprenyl
           synthetase
          Length = 360

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 137 ALPFTRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 24
           A   +   A+ MI  S++  DD PC  N+ +    PTN
Sbjct: 125 ATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTN 162


>At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:9294375; similar to geranylgeranyl pyrophosphate
           synthetase GB:P34802 [Arabidopsis thaliana]
          Length = 284

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 137 ALPFTRVAAICMITASTVYADDQPCFVNSSIHIAPPTN 24
           A   +   A+ MI  S++  DD PC  N+ +    PTN
Sbjct: 49  ATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTN 86


>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
           SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
           {Arabidopsis thaliana}; contains Pfam profile PF02716:
           Isoflavone reductase
          Length = 323

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 101 ITASTVYADDQPCFVNSSIHIAPPTNT 21
           I A T+ A D P  +N +++I PP NT
Sbjct: 202 IAAYTIKAVDDPRTLNKTLYINPPNNT 228


>At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase
           (GGPS6) / GGPP synthetase / farnesyltranstransferase
           identical to gi:2578821; similar to geranyl geranyl
           pyrophosphate synthase GI:2578822 from [Arabidopsis
           thaliana]
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 113 AICMITASTVYADDQPCFVNSSIHIAPPTN 24
           A+ MI A+++  DD PC  + S+    PTN
Sbjct: 107 AVEMIHAASLILDDLPCMDDDSLRRGKPTN 136


>At2g33610.1 68415.m04119 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 469

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 368 NVCLSVCATRFYVCAEYEWTFCEYC 442
           N C ++C+   + C +Y+ T C  C
Sbjct: 176 NGCKAICSIACFACDKYDLTLCARC 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,098
Number of Sequences: 28952
Number of extensions: 309213
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)