Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0406
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    35   0.014
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    31   0.13 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    28   1.2  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    28   1.6  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.1  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    27   2.7  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    27   2.7  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    26   6.3  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   6.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   6.3  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   6.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.3  

>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 18/65 (27%), Positives = 36/65 (55%)
 Frame = +2

Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKG 697
           E+   E+  +K+I+ Q     +E+    ++K++    +  K++VGL+  D++DEY  E  
Sbjct: 265 EEYVPEMERMKEIQRQTKERQKEAQLSKLMKDMHVSKD--KEDVGLTVSDAEDEYNGELV 322

Query: 698 DTGDD 712
           D  +D
Sbjct: 323 DPDED 327


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKG 697
           E + SE  AVK +        R  T+E  IK    + E  ++E  +   +S++E + + G
Sbjct: 327 EASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVG 386

Query: 698 D 700
           D
Sbjct: 387 D 387


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +2

Query: 512 SSEKTESEVSAV-----KDIEL-QNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQ 673
           S E++ESE S V     K +   ++     ES+EE        D+E++ +    SE +S+
Sbjct: 56  SEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESE 115

Query: 674 DEYKSEKGDTGDDT 715
            E +SE  +  D++
Sbjct: 116 SEEESESEEESDES 129


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 634 HFCITPNIFNNILLSTFSVVNMIL*LNVFHCT 539
           +FC+T  +   I  ST S V + L + VF CT
Sbjct: 217 YFCLTATVQYAIFFSTISRVGLALTILVFPCT 248


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 312 NFYQAIKEVLKYDVYVSDKCCITI*FF--ENMDDNNSAQKKSDEDITTGHGDETEEAKFA 485
           N+ + + + L ++ ++ D+ C    +F  ++  D  S +  SD D +T  GD   E    
Sbjct: 114 NYSENVNKQLNFESHLDDQTCSKRFYFNEQSGSDRYSLKCDSDTDSSTYFGDSASET--C 171

Query: 486 NQSPNSL 506
           + + NSL
Sbjct: 172 SSASNSL 178


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 182 KGSEIILLLEKVNLIVYDAKQTKLHESRAYFVSKFIICCSDQNP 51
           +G ++ LL  ++ L+       K   SRA  +  F++ C D NP
Sbjct: 167 RGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVV-CEDFNP 209


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 179 GSEIILLLEKVNLIVYDAKQT-KLHESRAYFVSKFIICCSDQNP 51
           G++  ++ +    IV  A    KL +    F+ +F++C S QNP
Sbjct: 63  GAQTTIIADMDRYIVNGAHDAGKLQDLLDVFIRRFVLCASCQNP 106


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 509 QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKS 688
           +    T +  ++V     Q   +H E++++ ++++   D +    E+   E +++DE KS
Sbjct: 161 EPESSTSATTTSVARRTRQRLAEHLENSKKTILQH---DNKEEDKEIHSEENETKDEIKS 217

Query: 689 EK 694
           EK
Sbjct: 218 EK 219


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 545 VKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGD 700
           ++ I L   +  +   EE   +    DTE+ ++E+G      + E     GD
Sbjct: 48  IRPIGLNRSMQEQLDLEEQEREEANQDTELDEEELGSGSFPEEGEMDDMDGD 99


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 197 HCDHPKGSEIILLLEKVNLIVYDAKQTKLHESRAYFVSKF 78
           H D+ + SE I L+   ++I+   +QT +   ++   SKF
Sbjct: 421 HVDYLQNSEFIDLVNADHIILVHGEQTNMGRLKSALASKF 460


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 432 DEDITTGHGDETEEAKFANQSPNSLDN 512
           D D    + DE++  ++AN SPNS ++
Sbjct: 645 DTDSDDSNADESQFLEYANDSPNSSES 671


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 518 EKTESEV-SAVKDIELQN--HVDHREST-EENVIKNVRSDTEMTKDEVGLSEVDSQDEYK 685
           EK ES   S ++   + N  H   +E+  E +   +  S++E+T     ++E DS+ E +
Sbjct: 150 EKNESNTASTIRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIE 209

Query: 686 SEKGDTGD 709
           S   D  D
Sbjct: 210 SSDSDHDD 217


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 393 ENMDDNNSAQKK---SDEDITTGHG 458
           EN  DNN   K    +DED+TTG G
Sbjct: 798 ENYQDNNDKWKNRQSADEDLTTGVG 822


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 581 RESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGDTGD 709
           R S EEN  +++ SD     +   L  VDSQ E ++E  + G+
Sbjct: 647 RHSNEENKYQSLNSDLPNVDEADALMAVDSQ-EKQAEPFELGE 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,874
Number of Sequences: 5004
Number of extensions: 50586
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)