Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0406
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    31   0.93 
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611...    29   2.8  
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    29   3.8  
11_06_0289 - 21969248-21973516                                         28   6.6  
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540...    28   8.7  
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865...    28   8.7  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   8.7  

>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +2

Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTK--DEVGLSEVDSQDEYKSE 691
           +K +++V      E +     +   +EN  K+  S TE  K  ++ G  +  +  + KS+
Sbjct: 693 QKEKNKVKKETAPETKQEPKEKTKIQENGTKSSDSKTEKDKLDNKEGKKDKPADKKDKSD 752

Query: 692 KGDTGDDTLK 721
           KGD G+ TL+
Sbjct: 753 KGDAGETTLR 762


>03_02_0961 +
           12759701-12760054,12760294-12760420,12760719-12761167,
           12761369-12761590,12761672-12761980,12762092-12762430,
           12762504-12762584,12762661-12762756,12762846-12763220,
           12763400-12763531,12763962-12764132
          Length = 884

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = +2

Query: 527 ESEVSAVKDIELQNHVDHRESTEENVIKN----VRSDTEMTKDEVGLSEVDSQDEYKSEK 694
           ++EV  + D+++   +   +  ++++ K+    +++    T  EVG+   +S  ++KS K
Sbjct: 573 DNEVHKIDDVQIGTALLDDDEPQDDLFKSFDDIIKNPGRKTTVEVGMLADNSWKKFKSSK 632

Query: 695 GDTGDDT 715
           G+ G +T
Sbjct: 633 GNDGSNT 639


>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
            34007684-34007851,34007908-34008099,34008164-34008346,
            34008414-34008590,34008667-34012074
          Length = 1748

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 515  SEKTESEVSAVKDIELQ---NHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYK 685
            +E +ES  +A K+ E      H D  E  EEN+   +        DEV   E  +++   
Sbjct: 1452 AEVSESNQTAPKESERTIPPEHEDREEEKEENMENKIEISIGRENDEVSEQETSTEECIV 1511

Query: 686  SEKG-DTGDDTLKG 724
            +  G D  D+  KG
Sbjct: 1512 APSGMDDRDENNKG 1525


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKG 697
           E+ + E    +  E Q     +E  +E     VR +TE  K++V   E + +D       
Sbjct: 462 ERRDMEKGGEERKEQQQEEQEKEGRKEEQ-NEVRKETEGRKEQVAGEEEEKEDHDADNDE 520

Query: 698 DTGDD 712
           D+ DD
Sbjct: 521 DSNDD 525


>05_03_0338 +
           12652966-12653017,12653813-12653860,12653924-12654080,
           12654104-12654206,12654866-12655111,12655802-12656204,
           12656257-12656354,12656460-12657044,12657120-12657566
          Length = 712

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 569 HVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDE 679
           H+   E  EE       S+ E TK+E+G  EVD  +E
Sbjct: 449 HMLLMEGDEEENATEENSEPEKTKEEIGEEEVDLPEE 485


>02_05_0361 +
           28285994-28286063,28286341-28286393,28286528-28286588,
           28286825-28287912
          Length = 423

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -3

Query: 688 TFILILAINL*KSNFIFSHFC----ITPNIFNNILLSTFS 581
           T+ LI A  L   N +FS+F      TP IFN+++L TFS
Sbjct: 192 TYSLICASQL-AFNAVFSYFLNAQKFTPLIFNSVVLLTFS 230


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 581 RESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGDTGDDTLKG 724
           R   +E++      D +   DE  + + + +DEY  E GD+ DD  +G
Sbjct: 512 RVQQDEDLDVTSSDDEDFVADEEEVEDTE-EDEYTDEDGDSDDDEDEG 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,238
Number of Sequences: 37544
Number of extensions: 275815
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)