Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0406
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4) 31 1.3
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 30 2.2
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 30 2.2
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 3.8
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 5.1
SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2) 29 5.1
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7) 28 8.9
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
Length = 647
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 509 QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDS 670
QS K E + K +EL V+ + + +N+ +N + E T E+GL V S
Sbjct: 379 QSDPKKRIERTKPKAVELHKEVELKGVSSDNIERNQERNVETTVMELGLRTVTS 432
>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 563 QNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGD 700
+N+ D E ++ + NV+SD +M+ S +DS E +SE GD
Sbjct: 21 KNNADLEEESDTDTASNVKSDEDMSSVSGTESRIDS--EIESEDGD 64
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKG 697
EKT+ E S + Q+H++ E I +R + ++E LS+ S+DE +
Sbjct: 808 EKTQ-EKSEADLTQFQSHIERERRDEIATIDAMRESLQDMEEEASLSQSLSEDEIQYSSA 866
Query: 698 DTGDDTL 718
D TL
Sbjct: 867 DNQLKTL 873
>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 1380
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 509 QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTK 640
QS+ ++E V +K+ + D +ESTE+ K + +DTE+ +
Sbjct: 1052 QSNGESERAVETIKNFLKKCDDDEKESTEDKCGKTMTADTELQR 1095
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 518 EKT-ESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEK 694
EKT E+E K E + D E EE + + E ++E E + ++EY+ E+
Sbjct: 67 EKTLEAENEEEKIEETEKEKDEEEKIEEEEKEGGEEENEEEEEEETEEEEEKEEEYEVEE 126
Query: 695 GD 700
G+
Sbjct: 127 GN 128
>SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 557 ELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGDTGDDTLKG 724
+ +N RES +V K+ D + ++ L +DE DTG+D L+G
Sbjct: 337 DAENKASKRES--RSVEKDNEGDADAKDEDAKLEGKSREDEISEHYQDTGEDVLQG 390
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 533 EVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDE 679
E+ K I +++ H+ES+ NV + +R + +E G+S V ++ +
Sbjct: 1425 EIKVEKAINIKDRNTHKESSRYNVSRCLRVSSSFIANEWGISPVTTEHQ 1473
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 435 HLIFFVHYYYHPCFRKIILLYSI--YLKRRRHT 343
+L+F V YY PC + I +LKRR+HT
Sbjct: 706 NLVFVVSVYYIPCIILSAICIKILRFLKRRKHT 738
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 604 NILLSTFSVVNMIL*LNVFHCTNFTFGF 521
+ LL T S V + + FHC NFT GF
Sbjct: 609 SFLLKTSSCVKCVGVNSTFHCVNFTSGF 636
>SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)
Length = 349
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 548 KDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGDTGDD 712
K++ + V+ ++ EN+ ++ DT + E + DS ++S D G+D
Sbjct: 205 KNVNIDRKVNKTKNIHENLYMLLKKDTALNYHEDIFPKSDSDQTWESSPWDLGED 259
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/78 (23%), Positives = 35/78 (44%)
Frame = +3
Query: 237 IYDLTSIPTHITT*PKNQ*SRLFCRNFYQAIKEVLKYDVYVSDKCCITI*FFENMDDNNS 416
++ + IP + KN +R C+ FY AI + ++SD C + ++ N
Sbjct: 652 VFKMEQIPQKCMSCGKNTHARRDCK-FYNAICRICNKRGHISDICMSSTNRKKSTPSKNK 710
Query: 417 AQKKSDEDITTGHGDETE 470
+++I+ G DE +
Sbjct: 711 PTHCVEQEISEGEEDEIQ 728
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 509 QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKS 688
+ E+ + E D E + D E +E+ K EM K+E+ E+D +D+
Sbjct: 46 EDKEEMDKEDKEEMDQEEMDKEDKEEMDKED--KEEMDQEEMDKEEMDQEEMDKEDKEDK 103
Query: 689 EKGD 700
E+ D
Sbjct: 104 EEMD 107
>SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7)
Length = 254
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/67 (19%), Positives = 35/67 (52%)
Frame = +2
Query: 515 SEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEK 694
SE + + S +D E ++ +++ T+ + ++ E + DE+ + + + +++ E
Sbjct: 103 SESSSDDQSYKEDEENEDFTTNKKDTQ--IASACKATKEESTDEISETNSNHESDFEVED 160
Query: 695 GDTGDDT 715
D GD++
Sbjct: 161 NDNGDES 167
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 393 ENMDDNNSAQKK-SDEDITTGHGDETEEAKFANQSPNS 503
+N+ D N K SD DI+ GDE E K S NS
Sbjct: 306 QNVSDGNRNSKNCSDNDISMVGGDEKLELKHNKSSENS 343
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 393 ENMDDNNSAQKKSDEDITTGHGDETEEAKFANQSPNSLDN 512
++ DDNN+ D+D + D+ +E +N + N D+
Sbjct: 143 DDYDDNNNNNDDYDDDNNNNNNDDDDEDDDSNNNNNDYDD 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,640
Number of Sequences: 59808
Number of extensions: 349331
Number of successful extensions: 986
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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