Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0406
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 548 KDIELQNHVDHRESTEEN-VIKNVRSD-TEMTKDEVG 652
           KDI  +++VD  E  +EN +I   +SD + M  D+ G
Sbjct: 410 KDILHEHNVDDNEDHDENMIIPPKKSDMSNMQSDDGG 446


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 715 CIISCVSFLTFILILA 668
           C++SC + + +I+ILA
Sbjct: 105 CVLSCWTNIYYIIILA 120


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 715 CIISCVSFLTFILILA 668
           C++SC + + +I+ILA
Sbjct: 158 CVLSCWTNIYYIIILA 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,524
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)