Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0406
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 31 0.59
At3g02125.1 68416.m00179 hypothetical protein 31 0.59
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 31 0.78
At2g19090.1 68415.m02229 expressed protein contains Pfam profile... 30 1.4
At4g26630.1 68417.m03837 expressed protein 29 4.1
At5g09460.1 68418.m01095 expressed protein 28 5.5
At2g41960.1 68415.m05191 expressed protein 28 5.5
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 28 7.2
At4g13160.1 68417.m02048 expressed protein contains Pfam profile... 28 7.2
At1g79180.1 68414.m09232 myb family transcription factor (MYB63)... 28 7.2
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 27 9.6
At3g49630.1 68416.m05424 2-oxoacid-dependent oxidase, putative s... 27 9.6
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 31.5 bits (68), Expect = 0.59
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 527 ESEVSAVKDIELQNHVDHRESTEENVIKNVRSDT--EMTKDEVGLSE-VDSQDEYKSEKG 697
+ EV +++D E ++ D TEE+ + D E +DE G SE + ++ +SE G
Sbjct: 43 DDEVDSMEDDEGESEEDDEGDTEEDDEGDSEEDDEGENKEDEDGESEDFEDGNDKESESG 102
Query: 698 DTGDDTLK 721
D G+D K
Sbjct: 103 DEGNDDNK 110
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +2
Query: 518 EKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKG 697
E E E +D E N + ES +E N + E + EV QD K+ K
Sbjct: 79 ENKEDEDGESEDFEDGNDKES-ESGDEGNDDNKDAQMEELEKEVKELRSQEQDILKNLKR 137
Query: 698 DTGDDTLKG 724
D G+D +KG
Sbjct: 138 DKGEDAVKG 146
>At3g02125.1 68416.m00179 hypothetical protein
Length = 355
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 605 IKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGD 700
++N SD E ++E +SEV+S DE++ E+ D
Sbjct: 177 VENSNSDIEDNEEEEKMSEVESDDEHEEEQTD 208
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +2
Query: 488 PKP**P*QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGL---- 655
PKP ++SEK E+++ +++E + V E T E + + + E ++V +
Sbjct: 243 PKP----ETSEKVETQLEKARELETEVEVVKAEETAE-ATEQAKVELEGKLEDVIVEEKD 297
Query: 656 SEVDSQDEYKSEKG 697
SE++S+DE SE G
Sbjct: 298 SEINSKDEKTSESG 311
>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
PF04782 protein of unknown function (DUF632), PF04783
protein of unknown function (DUF630); expression
supported by MPSS
Length = 814
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 545 VKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSEKGDTGDD 712
V ++ QNH + ++TEEN + D +EV + +VD +DE E GD DD
Sbjct: 263 VVNVRFQNHNPNPKATEEN---RGKVDKSCCNEEVKVEDVD-EDE--DEDGDEDDD 312
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 515 SEKTESEVSAVKDIELQNHVDHRESTEENVIKN-VRSDTEMTKDEVGLSEVDSQDEYKSE 691
+++ E+ K+ + +N E+ + V ++ V + E ++DE +V+S+D + E
Sbjct: 206 NKQVENVEGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEGSEDENDNEKVESKDAKEDE 265
Query: 692 KGDTGDD 712
K +T DD
Sbjct: 266 KEETNDD 272
>At5g09460.1 68418.m01095 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 402 DDNNSAQKKSDEDITTGHGDETEEAKFANQSPNSLD 509
DD+N + DE ++TGH T E + N + LD
Sbjct: 177 DDDNDDWESDDEVMSTGHSPFTVEQQACNITTEELD 212
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +2
Query: 509 QSSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKS 688
+SS ++SEV++ + +N VD + + K V TEM+ DE + ++ + +
Sbjct: 901 ESSSMSDSEVASQQSEGRENLVDTQNDMPDCHEKMVEKVTEMSMDERDVLKIKNISNLPA 960
Query: 689 EKGDT 703
+ G++
Sbjct: 961 DNGES 965
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 512 SSEKTESEVSAVKDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKS 688
SS S S D+ +H+D EEN ++ D E D + + D+Y S
Sbjct: 454 SSHSPSSNFSDDNDVTALDHIDSPSIFEENKFQSTVGDRESYNDSPVVVVAPAFDDYSS 512
>At4g13160.1 68417.m02048 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 282
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 548 KDIELQNHVDHRESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSE 691
K++E H+D + TE+N + D E +V + E +SQ + + +
Sbjct: 204 KELETYKHIDDDQETEDNEKRECDEDGEPIVYDVHVIEDNSQTKVRDD 251
>At1g79180.1 68414.m09232 myb family transcription factor (MYB63)
similar to myb-related protein GI:1370139 from
[Lycopersicon esculentum]
Length = 294
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 563 QNHVDHRESTEENVIKN-VRSDTEMTKDEVGLSEVDSQDEYKSEKGDT 703
+N R +TEE ++ V+ + + E+GL E D+Q +YK E+ +
Sbjct: 235 ENSSGSRATTEEESDEDEVKKWFKHLESELGLEEDDNQQQYKEEESSS 282
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 584 ESTEENVIKNVRSDTEMTKDEVGLSEVDSQDEYKSE 691
E EE + SD E K E LSE D EYK E
Sbjct: 113 EEEEEEEEEEDASDAETDKQEEYLSEDDEAAEYKPE 148
>At3g49630.1 68416.m05424 2-oxoacid-dependent oxidase, putative
strong similarity to partial cds of 2-oxoacid-dependent
oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
Length = 369
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 149 VNLIVYDAKQTKLHESRAYF-VSKFIICCSDQN 54
+ + + + K+TK+HE+ + +S ++ C D N
Sbjct: 30 IKVFILNLKETKMHETMVFVDISPLVVKCDDAN 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,017
Number of Sequences: 28952
Number of extensions: 246819
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -