Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0405
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.17
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 30 0.29
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 30 0.29
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 29 0.89
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 28 1.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 27 2.1
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 3.6
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 4.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 4.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.3
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 6.3
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.3
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.3
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 8.3
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
++A ++K EV T P S V++ P+KK + +E T E +P E PK
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVEKSFPKP 498
Query: 273 AT 278
A+
Sbjct: 499 AS 500
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 248
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVM----PKKATMHLRT 293
E+ + EP E+P S KVE A + AP + A P KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 294 VMPQKRKRLV 323
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 105 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKATMH 284
D+ A +E + E E + + E E ++ T+E P+++P E + K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 285 LRTVMP 302
V+P
Sbjct: 106 FYDVVP 111
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 144 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKAT-MHLRTVMPQKRK 314
+P +PVKKS K A + N + + S A PK A+ L P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
+E + KES K++PA+K + + ENGT+E + PA+ +K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 114 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 254
++ PE+ + + PVKK P+KK + A++N E DE + E
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEE 103
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -3
Query: 295 TVLRCIVAFFGITISAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 116
TV+ V ++ + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 115 SFLSTAASAIV 83
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAE 254
++ D + K + + +S EP + VKK +KK E + S + + E S +E
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSE 102
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 81 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMV 260
A A A + + +V+ + + +PK++PV S A + A N + T E ++
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 261 MPKK 272
KK
Sbjct: 267 SKKK 270
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 117 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEM 257
VAP +TS + V KS VE+ +++ T PED P+ M
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPM 333
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 350 HQEPQISSS-HQSLSFLWHHRSQMHRCFLRHHHFSRRIFW 234
H E +S HQ L +W Q CF + F RR+ +
Sbjct: 435 HSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRRLLY 474
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 144 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE-----MVMPKK 272
E +ESP+K P KK + E T + SP E MV PK+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVESKINLMVAPKR 939
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = -3
Query: 259 TISAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 80
++++ ++ ASS PF ++++++ G+F T + G+ +V+ S T + +++ VA
Sbjct: 557 SVNSTTATSASSTPFGNSTITSSASGSTGEF-TNTNSGNGDVSGSVTTPTSTPLSNSTVA 615
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 99 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 242
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 307 FCGITVLRCIVAFFGITISAGESSGASSVPFSLPLLSAASTFLAGDFLT 161
F G V+ +VAF G + ++ +SVP +L S+F AG+FL+
Sbjct: 277 FVGCLVI-FVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQAGNFLS 324
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 241 SSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 80
SSG++ VP S+P L L D+ T + + ATSF T S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 251
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,948
Number of Sequences: 5004
Number of extensions: 50599
Number of successful extensions: 208
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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