Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0403
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   2.1  
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    28   4.8  
12_01_0165 - 1237812-1237910,1237952-1238251                           27   8.4  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 159 IYILFPLSSCSLHEMLTRLVS*IQFKCRHSGIQNNFFLLPL*ADEHTAHL 10
           I + FP + CS   ++T  VS + + C  +GI  N+ + PL ++ H+  L
Sbjct: 298 ITVAFPDNDCSSTIIVTTRVSDVGWSCCLNGIDRNYQMEPL-SEVHSGRL 346


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +3

Query: 411 HQFSYVRMCTANTVSRTLNLPYFKTNVFSVWKLRHLVADASKLLCC 548
           H+FS   M   +   R  N  +FKT  FS W    +V DAS  LCC
Sbjct: 50  HKFSQKDM---SGCMRRFNPDWFKT--FSNWLEYSIVEDASYCLCC 90


>12_01_0165 - 1237812-1237910,1237952-1238251
          Length = 132

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -1

Query: 479 KVWQV*GPAYCVRSAHPNIAKLVVTYSGN*KKKTICSYGATLIVSLSFHFNILRRH 312
           K+W V GP+ C R +   +  +   + G+     + +Y     V + F   IL  H
Sbjct: 48  KLWVVAGPSICARFSSFGVTVISQAFIGHIGATELAAYALVSTVLMRFSNGILSYH 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,836,545
Number of Sequences: 37544
Number of extensions: 213899
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)