Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0403
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 453 SRTLNLPYFKTNVFSVWK 506
           S+T +LPY +TN+F +WK
Sbjct: 86  SQTRSLPYKETNIFLIWK 103


>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 456 RTLNLPYFKTNVFSVWKL 509
           +T +LPY +TN+F +WK+
Sbjct: 542 QTRSLPYKETNIFLIWKI 559


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 453 SRTLNLPYFKTNVFSVWK 506
           + T +LPY +TN+F +WK
Sbjct: 75  TETRSLPYKETNIFLIWK 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,787
Number of Sequences: 59808
Number of extensions: 261316
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)