Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0403
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    29   3.0  
At1g33080.1 68414.m04082 MATE efflux family protein similar to r...    29   3.0  

>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 479 KVWQV*GPAYCVRSAHPNIAKLVVTYSGN*KKKTICSYGATLIVSLSFHFNIL 321
           K+W V GPA   R +   ++ +   + G+     + +Y  TL V L F   IL
Sbjct: 39  KLWVVAGPAIFTRFSTSGLSLISQAFIGHLGSTELAAYSITLTVLLRFSNGIL 91


>At1g33080.1 68414.m04082 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 479 KVWQV*GPAYCVRSAHPNIAKLVVTYSGN*KKKTICSYGATLIVSLSFHFNIL 321
           K+W V GPA   R +   ++ +   + G+     + +Y  TL V L F   IL
Sbjct: 39  KLWVVAGPAIFTRFSTSGLSLISQAFIGHLGSTELAAYSITLTVLLRFSNGIL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,800
Number of Sequences: 28952
Number of extensions: 184342
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)