Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P81928 Cluster: RPII140-upstream gene protein; n=4; Dip...    44   0.003
UniRef50_UPI0000D56F74 Cluster: PREDICTED: similar to CG9852-PA;...    40   0.058
UniRef50_UPI00015A4023 Cluster: Ubiquitin carboxyl-terminal hydr...    36   1.3  
UniRef50_UPI0000D9A0E4 Cluster: PREDICTED: hypothetical protein ...    34   2.9  
UniRef50_UPI00015A404E Cluster: Zyg-11 protein homolog (Zyg-11 h...    33   5.1  
UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n...    33   6.7  
UniRef50_Q9NPL8 Cluster: Uncharacterized protein C3orf1; n=15; T...    33   6.7  
UniRef50_UPI0000F2E954 Cluster: PREDICTED: hypothetical protein;...    33   8.8  
UniRef50_Q4IR09 Cluster: mRNA 3'-end-processing protein RNA14; n...    33   8.8  

>UniRef50_P81928 Cluster: RPII140-upstream gene protein; n=4;
           Diptera|Rep: RPII140-upstream gene protein - Drosophila
           melanogaster (Fruit fly)
          Length = 261

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +2

Query: 263 VGVCFGGFVSSREAYLYFIENNQATAYKTVGDAK 364
           +G  +GG   SR AY+ F+ENNQATA+K+  DAK
Sbjct: 80  IGAIYGGVTQSRVAYMNFMENNQATAFKSHFDAK 113


>UniRef50_UPI0000D56F74 Cluster: PREDICTED: similar to CG9852-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG9852-PA - Tribolium castaneum
          Length = 262

 Score = 39.9 bits (89), Expect = 0.058
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +2

Query: 260 FVGVCFGGFVSSREAYLYFIENNQATAYKTVGDAK 364
           FVG  +GG V SR AY+ F++NNQATA+    +AK
Sbjct: 78  FVGGIYGGVVHSRVAYVNFMKNNQATAFTDHLEAK 112



 Score = 36.3 bits (80), Expect = 0.72
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +3

Query: 159 QTGWDRVKAMYKKNEFDEVSPELHTVV 239
           +TGWDR+K +++ ++F EVS EL TV+
Sbjct: 44  ETGWDRLKRVFEADDFGEVSKELLTVL 70


>UniRef50_UPI00015A4023 Cluster: Ubiquitin carboxyl-terminal
           hydrolase 15 (EC 3.1.2.15) (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15) (Unph-2) (Unph4).; n=1;
           Danio rerio|Rep: Ubiquitin carboxyl-terminal hydrolase
           15 (EC 3.1.2.15) (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15) (Unph-2) (Unph4). - Danio
           rerio
          Length = 912

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 115 KMITMSLTDLCLEALRQAGIGLKPCIKKTNSTKFLLNCIQLCNPHCACICWCL 273
           K  T    DLC  A+R   + ++P +       FL  C+ +C   C C+C C+
Sbjct: 170 KHCTSQCVDLCRSAMRPQQL-VRPVLNMQEVRLFLSLCLSVCVCVCVCVCVCV 221


>UniRef50_UPI0000D9A0E4 Cluster: PREDICTED: hypothetical protein
           isoform 1; n=1; Macaca mulatta|Rep: PREDICTED:
           hypothetical protein isoform 1 - Macaca mulatta
          Length = 227

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 141 PLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCVHLLVFVS 278
           P P  PQ+GWDR++ ++ K+E   +S EL  +  +    H L+ ++
Sbjct: 46  PEPYYPQSGWDRLQELFAKDEQQRISKELADISAAIHVRHDLLLLA 91


>UniRef50_UPI00015A404E Cluster: Zyg-11 protein homolog (Zyg-11
           homolog B-like).; n=2; Danio rerio|Rep: Zyg-11 protein
           homolog (Zyg-11 homolog B-like). - Danio rerio
          Length = 773

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 202 NSTKFLLNCIQLCNPHCACICWCLFRRICL 291
           NS K L  C+ +C   C C+C CL   +C+
Sbjct: 653 NSVKALSKCVCMCVSVCVCVCVCLCVCVCV 682


>UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC2038 UniRef100 entry -
           Rattus norvegicus
          Length = 184

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 187 CIKKTNSTKFLLNCIQLCNPHCACICWCL 273
           C K+ NS +    C+ +C   C C+C C+
Sbjct: 152 CAKRANSARLCYKCVCVCVCVCVCVCVCV 180


>UniRef50_Q9NPL8 Cluster: Uncharacterized protein C3orf1; n=15;
           Tetrapoda|Rep: Uncharacterized protein C3orf1 - Homo
           sapiens (Human)
          Length = 285

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 141 PLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCVHLLVFV 275
           P P  P++GWDR++ ++ K+E   +S +L  + ++     ++ +V
Sbjct: 46  PEPYYPESGWDRLRELFGKDEQQRISKDLANICKTAATAGIIGWV 90


>UniRef50_UPI0000F2E954 Cluster: PREDICTED: hypothetical protein;
           n=2; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 209

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 CIQLCNPHCACICWCLFRRICL 291
           C Q+C P CAC+C  +F  +C+
Sbjct: 172 CAQVCTPMCACVCAQVFTPMCV 193


>UniRef50_Q4IR09 Cluster: mRNA 3'-end-processing protein RNA14; n=2;
           Sordariomycetes|Rep: mRNA 3'-end-processing protein
           RNA14 - Gibberella zeae (Fusarium graminearum)
          Length = 997

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 294 DETNPPKQTPTNARTMWIAQLYAVQEKLRRIRFFYTWL 181
           DE N PK++PT  R + I + YA + +L      Y W+
Sbjct: 568 DEDNTPKRSPTEERILAIQKGYAAETQLLSRTISYVWI 605


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,946,204
Number of Sequences: 1657284
Number of extensions: 12775650
Number of successful extensions: 32719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32374
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)