Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    28   1.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.8  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.8  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.8  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 180 KAMYKKN--EFDEV-SPELHTVVQSTLCVHLLVFVSED-LSHL 296
           + +Y+ N  EF EV SPELHT+V+      LL   + D + HL
Sbjct: 385 RIIYRLNSGEFREVLSPELHTLVEDAHIYELLAAAASDQVKHL 427


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 86  KTWRQPDHRSDHFDKIPFP 30
           K W+  +H S H DK P P
Sbjct: 221 KPWKHEEHCSCHHDKFPRP 239



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 86  KTWRQPDHRSDHFDKIPFP 30
           K W+  +H S H DK P P
Sbjct: 250 KPWKHEEHCSCHHDKFPRP 268


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 108 RNENDYDVLNRPLPG 152
           +NE+DY + NR LPG
Sbjct: 287 QNEDDYTLFNRQLPG 301


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 606 CYHLRITPNIVKVTSIVN*KIIQKWVKIKRLSAGSIFFFLNIPIMNVLIN 457
           C  L I   ++ + S  N +++ K V I    +G +FFF N+  + ++++
Sbjct: 764 CLSLWIIGQLLWLISAYNLEMLGKSVFIPLWLSGLLFFFFNVYELKIILD 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,088
Number of Sequences: 5004
Number of extensions: 57842
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)