Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1170 - 10002650-10004122                                         29   2.7  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     29   4.7  

>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 87  VLPIFRERNENDYDVLNRPLPGGPQTGWDRVKAMYKK-NEFDEVSPELHTVVQSTLCVHL 263
           V+P   + N+++  V    +PG P   W ++  MY+   E DEVS  +  +    L +  
Sbjct: 170 VMPRREDENDDESPVGFPDIPGSPAFPWRQMSRMYRAYKEGDEVSDAV--MSNFLLNLQS 227

Query: 264 LVFVSEDLSHLEK 302
             FVS     LE+
Sbjct: 228 SSFVSNTFGQLER 240


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 293 MRQILRNKHQQMHAQCGLHNCMQFRR-NFVEFVFF 192
           ++ +LR   Q +H QCGL +C   R  + +  VFF
Sbjct: 173 VQNVLRKCEQLLHQQCGLSSCCNQRHLSHLRSVFF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,208,098
Number of Sequences: 37544
Number of extensions: 335830
Number of successful extensions: 912
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)