Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    28   6.3  
SB_29332| Best HMM Match : PAN (HMM E-Value=0.039)                     28   6.3  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   28   6.3  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         23   7.7  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   8.3  

>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 156 PQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCVHLLVFVSEDLSHL 296
           P + W R  + Y        +PE+   V+S     +LVF  +DL  L
Sbjct: 849 PGSSWKRYNSWYSHPAISFPTPEVLDFVRSIFAQAMLVFDGQDLDEL 895


>SB_29332| Best HMM Match : PAN (HMM E-Value=0.039)
          Length = 340

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 157 LRQAGIGLKPCIKKTNSTKFLLNCIQLCN--PHCACICWCLFRRIC 288
           L Q G  LK           LL C++LCN  P C  I + LF + C
Sbjct: 27  LTQYGFYLKNHKYDAKKVNNLLECLKLCNTDPKCITINFSLFDKEC 72


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 108 RNENDYDVLNRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCVHLLVFVSEDL 287
           R   D D   RP P        + K M  ++  +  S     V+ ST+CV +L+ V   +
Sbjct: 281 RQAADQDQAARPRPSCKTKPSPKTKTMPPRSRLEPQSSWNRAVIISTICVAILIAVITGI 340

Query: 288 SHL 296
           S L
Sbjct: 341 SIL 343


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 23.0 bits (47), Expect(2) = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 242  LHNCMQFRRNFVEFVFFIHGFNPIP 168
            + + M   R+ V F+F I+  NPIP
Sbjct: 3858 VRDIMVDERHRVSFIFAIYAPNPIP 3882



 Score = 23.0 bits (47), Expect(2) = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 179  NPIPACLRASRQRSVK 132
            NPI AC RA+ +R  K
Sbjct: 3918 NPITACFRAALKRGYK 3933


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 293  MRQILRNKHQQMHAQCGLHNCMQFRRN 213
            +RQI+R+KH       G + C ++R N
Sbjct: 1527 VRQIIRDKHMHQGNSSGTNTCSRYRAN 1553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,738,231
Number of Sequences: 59808
Number of extensions: 417862
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)