Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 165 GWDRVKAMYKKNEFDEVSPELHTVVQS 245
           GWDRV  +Y KNE D  S  ++ V +S
Sbjct: 175 GWDRVALLYFKNELDYCSSVVNDVEKS 201


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 67  SGCLQVLSYQFFVKEMKMITMSLTD-LCLEALRQAGIGLKPCIKKTNSTKF 216
           S CL  L Y FF    ++  M L D + L +LR    G +  +KK+  T+F
Sbjct: 317 SACLNPLIYAFFNHNFRIEFMHLFDRVGLRSLRVVIFGEQESLKKSMRTEF 367


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 172 IGLKPCIKKTNSTKFLLNCIQLCNPHCACICWCLFRRICLISRSLL 309
           +  +PC  K  + K  L+C QL  P   C   C++     ++R++L
Sbjct: 86  VNYQPCTSKGIANKLFLSCCQLYVPE-ECHHMCVYETDQSVTRNML 130


>AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical
           protein Y75B8A.10 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 431 TKHLSQHLYFKNNHVLCKPFTIPLH 357
           T H S ++ FK N VL KPF +  H
Sbjct: 31  TNHFSIYIVFKANMVLKKPFKLLYH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,732,769
Number of Sequences: 27780
Number of extensions: 330860
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)