Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0402
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    29   2.9  
At5g24450.1 68418.m02882 transcription factor-related low simila...    28   5.1  
At5g22730.1 68418.m02655 F-box family protein contains F-box dom...    28   5.1  
At2g42730.1 68415.m05292 F-box family protein contains F-box dom...    28   5.1  
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ...    28   6.8  
At4g13240.1 68417.m02059 hypothetical protein contains Pfam prof...    27   9.0  

>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 666 DILRNVKKLMSLFPRWPLVTCYHLRITPNIVKVTSIVN 553
           D+  N+  L+S+ P+ P+V+ +HL +   I   T+ VN
Sbjct: 286 DVYGNLLGLLSVHPQAPIVSIHHLDVVDPIFPKTNRVN 323


>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 327 LFSIKYK*ASRDETNPPKQTPTNARTMWIAQLYAVQEKLR-RIRFFYTWL*PDPSLSE 157
           LF +  +   ++   PPKQT  N +T W ++  A+ + LR R+   +  + P+P   +
Sbjct: 354 LFELDDEYIQQEIRKPPKQTTCNYKTGWFSE--ALLDNLRLRVAVRFVSVFPEPGFED 409


>At5g22730.1 68418.m02655 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 466

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 230 MQFRRNFVEFVFFIHGFNPIPACLRASRQRS 138
           M+  ++FVEF+++   F+P+P     SR ++
Sbjct: 320 MKISQHFVEFLYYYKDFDPLPQFCNLSRLKA 350


>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 737

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 1   DVCLVCCYQKGKGILSK*SER*SGCLQVLSYQFFVKEMKMITMSLTDL-CLEALR 162
           DVC+  CY   + I S  S      L++LSYQ   +E+  +   L  L CLE ++
Sbjct: 365 DVCV--CYDTDESITSCLSSSQVKVLEILSYQGTTRELNQMKHFLEKLPCLELVK 417


>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
           Pfam profilePF03107: DC1 domain
          Length = 569

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 269 VCFGGFVSSREAYLYFIENNQATAYKTVGDAKVL*K-VCIIHD--CF*NRDADSNVLY 433
           +C G  VSS ++Y + IE      ++ +G +K + K  C IH   C   R+ D ++ Y
Sbjct: 262 ICLGAVVSSLDSYYHCIECELEFHFECLGISKTISKRSCHIHPLVCKRVREEDDSLEY 319


>At4g13240.1 68417.m02059 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 517

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 96  IFRERNENDYDVLNRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQS 245
           +F ER E    +L +  PG PQ+  D  K  Y K+    V      +++S
Sbjct: 354 LFEERAETILVLLKQKFPGLPQSSLDISKIQYNKDVGHAVLESYSRILES 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,104
Number of Sequences: 28952
Number of extensions: 291850
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)