Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0401
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0998 - 8414492-8415175 35 0.060
03_02_0841 - 11669707-11670468 34 0.10
02_02_0280 - 8515894-8517309 34 0.10
04_04_1112 + 30984925-30985101,30985204-30985851 33 0.18
03_01_0476 - 3660327-3661261,3661401-3661668 31 0.74
01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384 31 1.3
05_01_0140 - 931039-931146,932659-932875,933117-933484,933644-93... 30 1.7
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311... 29 3.0
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751 29 5.2
01_07_0318 + 42703176-42703473,42703563-42704290 28 6.9
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 28 9.1
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 28 9.1
>07_01_0998 - 8414492-8415175
Length = 227
Score = 35.1 bits (77), Expect = 0.060
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = -1
Query: 374 CAFLNCRSCYVFCCVYCSTNCVCYCVFCGTD*RCAFFYSRLATLFVASTVVFRVV 210
C C CY CC C CV Y D R FY + L VA+ V+ V+
Sbjct: 5 CCECGCYECYDACCDRCCCGCVSY------DTRETIFYCAVCLLLVAAVVLLAVL 53
>03_02_0841 - 11669707-11670468
Length = 253
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/85 (28%), Positives = 31/85 (36%)
Frame = +1
Query: 1 ETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNVAASTVEKGAS 180
+ VA S +ATKN + + AKDT A D K A T + A
Sbjct: 161 DAVAQKASDASEATKNKLGEYKDALARKTRDAKDTTAQKATEFKDGVKATAQETRDATAD 220
Query: 181 LIGTAKDTVATTLNTTVDATKSVAS 255
AKD T T D + A+
Sbjct: 221 TARKAKDATKDTTQTAADKARETAA 245
Score = 32.3 bits (70), Expect = 0.42
Identities = 24/88 (27%), Positives = 30/88 (34%)
Frame = +1
Query: 10 ANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNVAASTVEKGASLIG 189
A+ T DA A+ E +G KD LA DTT A + +
Sbjct: 153 ADKTRETKDAVAQKASDASEATKNKLGEYKDALARKTRDAKDTTAQKATEFKDGVKATAQ 212
Query: 190 TAKDTVATTLNTTVDATKSVASLL*KKA 273
+D A T DATK KA
Sbjct: 213 ETRDATADTARKAKDATKDTTQTAADKA 240
Score = 31.1 bits (67), Expect = 0.97
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Frame = +3
Query: 294 KDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTV----DKTKTVAASAVDTSL 461
KD VA S + TKN + AKDT AQ D K A D +
Sbjct: 160 KDAVAQKASDASEATKNKLGEYKDALARKTRDAKDTTAQKATEFKDGVKATAQETRDATA 219
Query: 462 SYAGAAKDTVANT 500
A AKD +T
Sbjct: 220 DTARKAKDATKDT 232
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +1
Query: 1 ETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNVAASTVEKGAS 180
++VA + T DA+++ + + KD +A + TKN + A
Sbjct: 128 DSVARKTNETADASRDKLGEYKDYTADKTRETKDAVAQKASDASEATKNKLGEYKDALAR 187
Query: 181 LIGTAKDTVATTLNTTVDATKSVA 252
AKDT A D K+ A
Sbjct: 188 KTRDAKDTTAQKATEFKDGVKATA 211
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 291 AKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYA 470
AKDT A + D V A+A E + +TA+ T D T+T A A +T+ ++
Sbjct: 192 AKDTTAQKATEFKD---GVKATAQETRDATADTARKAKDATKDTTQTAADKARETAATHD 248
Query: 471 GA 476
A
Sbjct: 249 DA 250
>02_02_0280 - 8515894-8517309
Length = 471
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/95 (26%), Positives = 36/95 (37%)
Frame = +3
Query: 216 SKHNRRCYEKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAK 395
++ + + ++ A E + A D T TT DTT +A A +T K
Sbjct: 316 AEQGKEAAARAADGAEEPSSGTADKAGDMAGQTKDTTSDTTGGMAHKAGAMAAQTKDTVK 375
Query: 396 DTVAQTVDKTKTVAASAVDTSLSYAGAAKDTVANT 500
D A KT A A AG AK+ A +
Sbjct: 376 DAAAAMAQKTSDTIAQAGHG----AGEAKNRAAES 406
Score = 32.3 bits (70), Expect = 0.42
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 243 KCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQT--- 413
+ ++ A KGT AKD A+ + K A +A + AKD T
Sbjct: 156 RAADYAAAKGTE----AKDAGAHAAQAATEKAKVAAGTATDYARQAAAKAKDVTLSTGGT 211
Query: 414 -VDKTKTVAASAVDTSLSYAGAA 479
+KTK VA S T+ YA A
Sbjct: 212 AAEKTKDVALSTGGTASEYAKQA 234
Score = 31.5 bits (68), Expect = 0.74
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Frame = +3
Query: 249 SESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVA----QTV 416
+E + S GTA + D T + +A E + E A+D T
Sbjct: 213 AEKTKDVALSTGGTASEYAKQAAVKGKDVTLSAGETAAEHAKAAAEKARDAAVAAGRTTA 272
Query: 417 DKTKTVAASAVDTSLS----YAGAAKDTVANTVHR 509
+ T+ A A D +LS A AK+ A+T H+
Sbjct: 273 EYTQQAAVKAKDVTLSTGATVAQKAKEVTADTAHK 307
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 94 AKDTLANTVHTTVDTTKNVAASTVEKGASLIGTAKDTVATTLNTTVDATKSVA 252
AKD A+ + K A + + AKD +T T + TK VA
Sbjct: 168 AKDAGAHAAQAATEKAKVAAGTATDYARQAAAKAKDVTLSTGGTAAEKTKDVA 220
>04_04_1112 + 30984925-30985101,30985204-30985851
Length = 274
Score = 33.5 bits (73), Expect = 0.18
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Frame = +3
Query: 267 KGTSLIGTAKDTVANTVSTTVDT----TKNVAASAVEKGTSLIETAKDT--VAQ-TVDKT 425
+ + G AKD +T S D T A +K + + AKD +AQ T
Sbjct: 104 RAADIAGRAKDETKDTASRAADAASRATDRAKHEAADKAADVKDRAKDAADMAQGTARAV 163
Query: 426 KTVAASAVDTSLSYAGAAKD-TVANTVHRQ*I*PKMQRLLHMTKERRSLTVLKAR 587
+ A + ++ AG AKD TV T H +++ MTKE S V A+
Sbjct: 164 RDKTAETAEGAMDRAGEAKDRTVEGTKHAG------EKVAEMTKEGASKVVETAQ 212
>03_01_0476 - 3660327-3661261,3661401-3661668
Length = 400
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/82 (25%), Positives = 30/82 (36%)
Frame = +3
Query: 243 KCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDK 422
K E+A EK AKD T +T + A K + + D K
Sbjct: 170 KVEETAKEKAGEGYDAAKDKAGKAQETLRQST-DAAKDKAGKAQETLRQSTDAARDKAGK 228
Query: 423 TKTVAASAVDTSLSYAGAAKDT 488
+ + D + AGAAKD+
Sbjct: 229 AQETLRQSTDAAAEKAGAAKDS 250
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 285 GTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLS 464
G A++T+ + + SA E+ +S + A + D +SA D +
Sbjct: 227 GKAQETLRQSTDAAAEKAGAAKDSAWERTSSAKDAAAEKAGSAKDAAWEKTSSAKDAAAE 286
Query: 465 YAGAAKD 485
AGAAKD
Sbjct: 287 KAGAAKD 293
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +3
Query: 288 TAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSY 467
+AKD A + D +SA + AKD + + A + + +
Sbjct: 257 SAKDAAAEKAGSAKDAAWEKTSSAKDAAAEKAGAAKDAAREKAEAAGEKARQSKEAAKGK 316
Query: 468 AGAAKD 485
AGAAKD
Sbjct: 317 AGAAKD 322
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 249 SESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTK 428
+++A EK G AKD+ S+ D A SA + +AKD A+ K
Sbjct: 237 TDAAAEKA----GAAKDSAWERTSSAKDAAAEKAGSAKDAAWEKTSSAKDAAAEKAGAAK 292
Query: 429 TVAASAVDTSLSYAGAAKD 485
A + + A +K+
Sbjct: 293 DAAREKAEAAGEKARQSKE 311
>01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384
Length = 215
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = +3
Query: 258 AVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVA 437
A ++ +A D + T A +A +K + AK+T DKT V
Sbjct: 106 AKDRAADTAQSAADRARDGAGQTGSYIGQTAEAAKQKAAGAAQYAKETAIAGKDKTGAVL 165
Query: 438 ASAVDTSLSYAGAAKDTVANTV 503
A + S A AKD V T+
Sbjct: 166 QQAGEQVKSVAVGAKDAVMYTL 187
>05_01_0140 -
931039-931146,932659-932875,933117-933484,933644-933733
Length = 260
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +1
Query: 19 VSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNVAAS-------TVEKGA 177
+ TV T A + + TA T ANT+ DTT +AAS T A
Sbjct: 68 MEATVTVTAVTMAVAASLAAITMATAAIT-ANTMEAITDTTTTMAASMAVITDTTATTAA 126
Query: 178 SLIGTAKDTVATTLNTTV 231
S+ T T+ T+NT +
Sbjct: 127 SMAVTTAVTMVATINTAL 144
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 306 ANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYA 470
ANT+ DTT +AAS + +T T A T + ++T+LS++
Sbjct: 97 ANTMEAITDTTTTMAASM----AVITDTTATTAASMAVTTAVTMVATINTALSFS 147
>12_01_0395 -
3117315-3118117,3118354-3118478,3118558-3118770,
3118850-3120076,3120537-3120622,3121197-3121223
Length = 826
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 177 LSYRHC*RHCSNHSKHNRRCYEKCSESAVEKGTSLIGTAKDTVANTVSTTVD 332
L +R C + C E V KG++ G A + VANT S VD
Sbjct: 362 LDHRSLENTCPTKKRRRYICPSDDEEEEVIKGSTTTGCAPNDVANTASQHVD 413
>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
Length = 478
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 112 NTVHTTVDTTKNVAASTVEKGASLIGTAKDTVATTLNTTVDATKSV 249
+ V + K A TVEK + AK+ + +N+ V A KSV
Sbjct: 37 SVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSV 82
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -1
Query: 374 CAFLNCRSCYVFCCVYCSTNCVCYCVFCGTD*RCAFF 264
C R C V C C C+ C +C T C F
Sbjct: 68 CTNTGRRPCVVSCPSNCPNKCLVACAYCLTFCMCDLF 104
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -1
Query: 374 CAFLNCRSCYVFC--CVYCSTNCVCYCVFC 291
C F+ CR + FC C T V YC C
Sbjct: 297 CTFMRCRCGFFFCYNCAAPMTKLVHYCKKC 326
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 258 AVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVA 437
A K ++ A D++ N + VD + V ASA + + D A +DK VA
Sbjct: 416 APRKNLDVMKAAIDSMVNDATNDVDDGEKVDASAKKSKKKKSKAEADGEAMDLDKPSNVA 475
Query: 438 ASA 446
A
Sbjct: 476 DEA 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,218
Number of Sequences: 37544
Number of extensions: 250207
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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