Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0401
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30930.1 68415.m03771 expressed protein 45 5e-05
At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont... 37 0.012
At4g21020.1 68417.m03041 late embryogenesis abundant domain-cont... 33 0.15
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont... 31 0.61
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 31 1.1
At4g36600.1 68417.m05195 late embryogenesis abundant domain-cont... 30 1.4
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 30 1.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 2.5
At2g29605.1 68415.m03595 hypothetical protein 29 3.3
At1g56415.1 68414.m06488 Expressed protein 29 3.3
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 4.3
At5g15690.1 68418.m01835 hypothetical protein very low similarit... 28 5.7
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu... 28 7.6
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem... 28 7.6
At2g03740.1 68415.m00334 late embryogenesis abundant domain-cont... 28 7.6
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 28 7.6
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 28 7.6
At5g44310.2 68418.m05424 late embryogenesis abundant domain-cont... 27 10.0
At5g44310.1 68418.m05423 late embryogenesis abundant domain-cont... 27 10.0
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At2g45060.1 68415.m05609 expressed protein 27 10.0
At2g18340.1 68415.m02137 late embryogenesis abundant domain-cont... 27 10.0
>At2g30930.1 68415.m03771 expressed protein
Length = 164
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +3
Query: 261 VEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAA 440
+EK TS + AK++V +T + + + + + S + A+ TVA +V+ KT AA
Sbjct: 5 LEKATSALSEAKESVTSTAESVTASLTDAEKTVNQTARSTLTDAETTVAASVETVKTEAA 64
Query: 441 SAVDTSLSYAGAAKDTVANTVHR 509
+A D + + AKD V R
Sbjct: 65 AAPDKASGVSTQAKDAVDKAFSR 87
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 TVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNV----AASTVEKGASL 183
TV+ +V+ K AAA +K S + AKD + ++ K++ A + + + L
Sbjct: 51 TVAASVETVKTEAAAAPDKASGVSTQAKDAVDKAFSRGIEGAKSLLQTFEAKSSDISSKL 110
Query: 184 IGTAKDTVATTLNTTV 231
+G + V+ ++TV
Sbjct: 111 VGGVTNLVSGASSSTV 126
>At3g17520.1 68416.m02238 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to PIR|S04045|S04045 embryonic
abundant protein D-29 [Gossypium hirsutum]; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 298
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +3
Query: 207 SNHSKHNRRCYEKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNV-------AASAVE 365
S +K + ++ + A EK + TAK+ ++ S + + + + SA E
Sbjct: 179 SEKAKEAKEAAKRKAGDAKEKLAETVETAKEKASDMTSAAKEKAEKLKEEAERESKSAKE 238
Query: 366 KGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAGAAKDTVANTVHR 509
K ETAK +T++ K A+ + D++ + AKDTV++ R
Sbjct: 239 KIKESYETAKSKADETLESAKDKASQSYDSAARKSEEAKDTVSHKSKR 286
>At4g21020.1 68417.m03041 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P23283 Desiccation-related
protein {Craterostigma plantagineum}; contains Pfam
profile PF02987: Late embryogenesis abundant protein
Length = 266
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 294 KDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAG 473
+DT D A+ A +K E AKD +T +K K A +A + + YA
Sbjct: 71 EDTGEYYAQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAE 130
Query: 474 AAKDTV 491
KD V
Sbjct: 131 RTKDKV 136
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/98 (25%), Positives = 35/98 (35%)
Frame = +3
Query: 264 EKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAAS 443
EK AK+ + T D A A +K E AKD T+D K A
Sbjct: 112 EKAKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARH 171
Query: 444 AVDTSLSYAGAAKDTVANTVHRQ*I*PKMQRLLHMTKE 557
A + Y K+ ++ + K + L TKE
Sbjct: 172 AKEKVKEYGEDTKEKAEG--FKETVKGKAEELGEKTKE 207
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/88 (25%), Positives = 32/88 (36%)
Frame = +3
Query: 240 EKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVD 419
E +++A +K A D T D A + + E AKD +T D
Sbjct: 75 EYYAQAAKDKANEGASKAADKAYETKEQAKDKAYETKEKAKDTAYNAKEKAKDYAERTKD 134
Query: 420 KTKTVAASAVDTSLSYAGAAKDTVANTV 503
K A A D + AKD +T+
Sbjct: 135 KVNEGAYKAADKAEDTKEKAKDYAEDTM 162
>At4g13560.1 68417.m02113 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein similar to LEA protein [Cicer arietinum]
GI:2909420; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 109
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 357 AVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAGAAKDTVANTVH 506
A EK E+AK T DKT + SA D + +A+D A+ H
Sbjct: 15 AQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADGSH 64
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +3
Query: 291 AKDTVANTVSTTVDTTKNVAASAVEKGTSLI----ETAKDTVAQTVDKTKTVAASAVDTS 458
AKDT A T + T + A A +K I + A D + DKT A + +
Sbjct: 131 AKDTTAEKAKETANYTADKAVEAKDKTAEKIGEYKDYAVDKAVEAKDKTAEKAKETANYT 190
Query: 459 LSYAGAAKDTVANTV 503
A AKD A V
Sbjct: 191 ADKAKEAKDKTAEKV 205
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/81 (24%), Positives = 27/81 (33%)
Frame = +3
Query: 252 ESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKT 431
++ VEK + V TVD K + EK D + DKT
Sbjct: 100 DATVEKAKETADYTAEKVGEYKDYTVDKAKEAKDTTAEKAKETANYTADKAVEAKDKTAE 159
Query: 432 VAASAVDTSLSYAGAAKDTVA 494
D ++ A AKD A
Sbjct: 160 KIGEYKDYAVDKAVEAKDKTA 180
Score = 27.5 bits (58), Expect = 10.0
Identities = 23/79 (29%), Positives = 30/79 (37%)
Frame = +3
Query: 249 SESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTK 428
SE AV + + AK+T T + A E + E AK+T T DK
Sbjct: 92 SEKAVGAKDATVEKAKETADYTAEKVGEYKDYTVDKAKEAKDTTAEKAKETANYTADK-- 149
Query: 429 TVAASAVDTSLSYAGAAKD 485
A A D + G KD
Sbjct: 150 --AVEAKDKTAEKIGEYKD 166
>At4g36600.1 68417.m05195 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P20075 Embryonic protein
DC-8 {Daucus carota}; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 335
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/89 (26%), Positives = 37/89 (41%)
Frame = +3
Query: 237 YEKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTV 416
Y+K SA EK G AKD + + D N A ++ T AKD+ T
Sbjct: 180 YDKAG-SASEKA----GQAKDFAYDKAAHAKDAAYNKAEDVIKMATDTSGEAKDSAYGTY 234
Query: 417 DKTKTVAASAVDTSLSYAGAAKDTVANTV 503
++ K + +A D + A ++T V
Sbjct: 235 ERFKEGSKNAKDIASDKAHDVRETAGRAV 263
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = +3
Query: 237 YEKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTV 416
Y K +E ++ T G AKD+ T + +KN A +K + ETA + V
Sbjct: 209 YNK-AEDVIKMATDTSGEAKDSAYGTYERFKEGSKNAKDIASDKAHDVRETA----GRAV 263
Query: 417 DKTKTVAASAVDTSLSYAG 473
D K A A ++ AG
Sbjct: 264 DYAKDKANDAYESGSEAAG 282
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/78 (24%), Positives = 29/78 (37%)
Frame = +1
Query: 43 KNVAAAVVEKGSTIVGTAKDTLANTVHTTVDTTKNVAASTVEKGASLIGTAKDTVATTLN 222
K++A S G AKD + D N A ++ G AKD+ T
Sbjct: 176 KDMAYDKAGSASEKAGQAKDFAYDKAAHAKDAAYNKAEDVIKMATDTSGEAKDSAYGTYE 235
Query: 223 TTVDATKSVASLL*KKAH 276
+ +K+ + KAH
Sbjct: 236 RFKEGSKNAKDIASDKAH 253
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/113 (26%), Positives = 43/113 (38%)
Frame = +3
Query: 75 FNDCGNSKRYACKHRSHHCRYYEKCSSIDR*KGRLSYRHC*RHCSNHSKHNRRCYEKCSE 254
FN S+ Y C H R SSI GR S C R C+ R C
Sbjct: 319 FNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYR-CNGSGHFARECPNSSQV 377
Query: 255 SAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQT 413
S ++ TS + K N ++ D+T + + +K +T K+ QT
Sbjct: 378 SKRDRETSTT-SHKSRKKNKENSEHDSTPHESNGKTKKKKKK-KTHKEEQPQT 428
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 736 TMLLCHIQIRQLICTFNGTR*CVFS-AFK*SGTFVCSG 626
T+ L ++ +++C+FNG R V+S AF +G ++ SG
Sbjct: 522 TVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASG 559
>At2g29605.1 68415.m03595 hypothetical protein
Length = 401
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 315 VSTTVDTTKNVAASAVEKGTSLIET 389
VS T+DT KN+ A+ + K SL ET
Sbjct: 18 VSETIDTIKNIIATCIRKYMSLEET 42
>At1g56415.1 68414.m06488 Expressed protein
Length = 94
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 84 CGNSKRYACKHRSHHCRYYEKCSSIDR*KGRLSYRHC*RHCSNHSKHNRRCYEKC 248
C +SK +AC HC + S I + + C R+C + + CY++C
Sbjct: 35 CRDSKSFACSDCIIHCAFPGSESKISQPRAL-----CLRNCDVGCRPSNTCYQRC 84
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +3
Query: 258 AVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVA 437
AVE T++ A DTV+N+++ + D +A++ + +TA D V D + ++A
Sbjct: 470 AVENDTAIDSMADDTVSNSMAESDDGDNVEDDTAID--SMCDDTANDDVGS--DDSGSLA 525
Query: 438 ASAVDTSLSYAGAAKDTVANT 500
+ DTS+ + VANT
Sbjct: 526 DTVSDTSVE--AVPLEFVANT 544
>At5g15690.1 68418.m01835 hypothetical protein very low similarity
to MtN20 [Medicago truncatula] GI:2598591
Length = 169
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 377 RCAFLNCRSCYVFCCVYC 324
+ +F +CR C CC+YC
Sbjct: 138 KVSFEDCRGCCCDCCIYC 155
>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
putative / LEA protein, putative similar to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 479
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +3
Query: 291 AKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYA 470
AKD A V D T A + G S I KD+ T + + + + A
Sbjct: 262 AKDKTAEKVGEYRDYTAEKATETKDAGVSKIGELKDSAVDTAKRAMGFLSGKTEETKQKA 321
Query: 471 GAAKDT 488
KDT
Sbjct: 322 VETKDT 327
Score = 27.5 bits (58), Expect = 10.0
Identities = 25/82 (30%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Frame = +3
Query: 291 AKDTVANTVST----TVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKT-------KTVA 437
AKDT A + TVD K EK E D +T DKT K
Sbjct: 189 AKDTTAEKLGEYKDYTVDKAKEAKDKTAEKAKETAEYTSDKARETKDKTAEKVGEYKDYT 248
Query: 438 ASAVDTSLSYAGAAKDTVANTV 503
A + A AKD A V
Sbjct: 249 AEKAKETADKAREAKDKTAEKV 270
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 94 AKDTLANTVHTTVDTTKNVAASTVEKGASLIGTAKDTVATT 216
AKD A V D T A T + G S IG KD+ T
Sbjct: 262 AKDKTAEKVGEYRDYTAEKATETKDAGVSKIGELKDSAVDT 302
>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA9)
identical to SP|Q9LU41 Potential calcium-transporting
ATPase 9, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
Length = 1086
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 303 VANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAGAAK 482
+A T++ K +A A+ + S ET DKT T+ + + +YAG +K
Sbjct: 457 LAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVETYAGGSK 516
Query: 483 DTVAN 497
VA+
Sbjct: 517 MDVAD 521
>At2g03740.1 68415.m00334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein similar to cold-regulated gene cor15b
[Arabidopsis thaliana] GI:456016; contains Pfam profile
PF02987: Late embryogenesis abundant protein
Length = 189
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = +3
Query: 285 GTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLS 464
G A D+VA D E+ TS + AKD + + K A + +
Sbjct: 110 GEAMDSVAENAKRASDFVTEKGKEVKEETTSRTDKAKDFIVEKAGDVKDTAMDMRNKTSK 169
Query: 465 YAG 473
Y G
Sbjct: 170 YVG 172
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 399 TVAQTVDKTKTVAASAVDTSLSY 467
T+ +T+D TKT+ A+AVD + +Y
Sbjct: 288 TIGETLDITKTMTATAVDMTNAY 310
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/96 (21%), Positives = 44/96 (45%)
Frame = +3
Query: 186 RHC*RHCSNHSKHNRRCYEKCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVE 365
R C + ++H++ R+C++ S T GT K T + + V + + +++A
Sbjct: 246 RSCRKRLADHNRRRRKCHQSAS------ATQDTGTGKTTPKSPNDSGVKASSSPSSNA-- 297
Query: 366 KGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAG 473
T +E + QT + T A+S+ ++ +G
Sbjct: 298 PPTISLECFRQRQFQTTASSSTSASSSSNSMFFSSG 333
>At5g44310.2 68418.m05424 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 331
Score = 27.5 bits (58), Expect = 10.0
Identities = 23/86 (26%), Positives = 31/86 (36%)
Frame = +3
Query: 243 KCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDK 422
K E A +K + K+ + T + A+ A +K E AKD +K
Sbjct: 88 KTKEEAKDKAYDM----KERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDVKEK 143
Query: 423 TKTVAASAVDTSLSYAGAAKDTVANT 500
TK A A D A A D T
Sbjct: 144 TKDYAEEAKDKVNEGASRAADKAYET 169
>At5g44310.1 68418.m05423 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 295
Score = 27.5 bits (58), Expect = 10.0
Identities = 23/86 (26%), Positives = 31/86 (36%)
Frame = +3
Query: 243 KCSESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDK 422
K E A +K + K+ + T + A+ A +K E AKD +K
Sbjct: 52 KTKEEAKDKAYDM----KERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDVKEK 107
Query: 423 TKTVAASAVDTSLSYAGAAKDTVANT 500
TK A A D A A D T
Sbjct: 108 TKDYAEEAKDKVNEGASRAADKAYET 133
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 306 ANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAGAAKD 485
A TV V T + A+E ++E+ AQ +K+++ + + AGA +
Sbjct: 33 APTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKSRSARRGSQVVDVESAGANRS 92
Query: 486 T 488
T
Sbjct: 93 T 93
>At2g45060.1 68415.m05609 expressed protein
Length = 272
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 318 STTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTKTVAASAVDTSLSYAGAAKDTV 491
+TTV+ + A+ + +T +TV T+D +K + DTS+++ D++
Sbjct: 36 TTTVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSL 93
>At2g18340.1 68415.m02137 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P20075 Embryonic protein
DC-8 {Daucus carota}; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 456
Score = 27.5 bits (58), Expect = 10.0
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +3
Query: 249 SESAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAKDTVAQTVDKTK 428
++S ++ G G AKD D + A A + AKD K
Sbjct: 234 AQSMMDSGYDKAGDAKDMAYEKAGIVKDMAYDKAGDAKDVAYEKAGIAKDMAYDKAGNAK 293
Query: 429 TVAASAVDTSLSYAGAAKDT 488
+A V ++ A AKD+
Sbjct: 294 DMAYDKVGSAYGSAQKAKDS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,662,320
Number of Sequences: 28952
Number of extensions: 207018
Number of successful extensions: 769
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -