Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0400
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 154 1e-38
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 118 1e-27
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 101 8e-23
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 89 8e-19
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 86 4e-18
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 77 2e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 7e-14
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 64 3e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 62 6e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 62 1e-10
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 60 2e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 57 2e-09
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 56 7e-09
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 55 9e-09
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 50 3e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 48 1e-06
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 42 9e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 9e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.003
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 34 0.024
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 33 0.032
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 28 1.6
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 2.1
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 154 bits (373), Expect = 1e-38
Identities = 69/91 (75%), Positives = 79/91 (86%)
Frame = +2
Query: 254 LNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC 433
L GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYD TDQDSF+NVKQWL+EIDRYA
Sbjct: 52 LEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAV 111
Query: 434 DNVNKLLVGNKCDLTTKKVVDFSTASNMRNN 526
+ VN+LLVGNK D+ KKVV++S A ++
Sbjct: 112 EGVNRLLVGNKSDMVDKKVVEYSVAKEFADS 142
Score = 102 bits (244), Expect = 6e-23
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +3
Query: 108 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVD 254
PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT +
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFE 51
Score = 70.1 bits (164), Expect = 3e-13
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +1
Query: 511 QYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPA-GHVKIDQGQPIDT 687
++A+ L IPFLETSAK+STNVEQAF+TM+ +IK R+G + ++ A VK+ QG +
Sbjct: 138 EFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQ 197
Query: 688 GKSSCC 705
S+CC
Sbjct: 198 SSSNCC 203
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 118 bits (283), Expect = 1e-27
Identities = 49/82 (59%), Positives = 66/82 (80%)
Frame = +2
Query: 254 LNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC 433
L+GK IKLQIWDTAGQERFRTIT++YYRGA GI+++YD TD+ SF NV+ W ++++A
Sbjct: 53 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS 112
Query: 434 DNVNKLLVGNKCDLTTKKVVDF 499
+NV K+L+GNKCD ++ V F
Sbjct: 113 ENVYKILIGNKCDCEDQRQVSF 134
Score = 85.0 bits (201), Expect = 1e-17
Identities = 36/47 (76%), Positives = 45/47 (95%)
Frame = +3
Query: 114 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVD 254
YDYL KLLLIGDSGVGKSCLLLRF++D++T S+I+TIG+DFKIRT++
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIE 52
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1
Query: 517 AEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 609
A++LG+ FLE SAK + NV++AF T+A EIK
Sbjct: 141 ADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 101 bits (243), Expect = 8e-23
Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +2
Query: 254 LNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC 433
L+ K IK QIWDTAGQER+R ITS+YYRGA G +IVYD T Q SF NV +WL+E+ +A
Sbjct: 54 LDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD 113
Query: 434 DNVNKLLVGNKCDLTTKKVVDFSTASNM--RNNWAF 535
N+ +LVGNK DL + V A NN +F
Sbjct: 114 SNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSF 149
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +3
Query: 111 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
EYDYLFK +LIGDSGVGKS LL+RF + + STIGV+F R +
Sbjct: 6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNI 52
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 514 YAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAG 651
+A + + F+ETSA +++NVE+AF T+ EI V S A G
Sbjct: 141 FAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDG 186
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 88.6 bits (210), Expect = 8e-19
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +2
Query: 263 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNV 442
K IKLQIWDTAGQE+FR++ +YYRGA G ++VYD T++DSF + WL +I A +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 443 NKLLVGNKCDLTTKKVVDFSTAS 511
+L G+K DL ++ V A+
Sbjct: 120 CVVLAGSKSDLQNQRQVSTEEAA 142
Score = 52.8 bits (121), Expect = 5e-08
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +3
Query: 114 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
YDYL K++L G SG GKSCLL RF + + + T+G+DF R +
Sbjct: 6 YDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRII 51
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 86.2 bits (204), Expect = 4e-18
Identities = 39/80 (48%), Positives = 56/80 (70%)
Frame = +2
Query: 254 LNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC 433
L +T++LQ+WDTAGQERFR++ SY R + IIVYD T+ +SF N ++W+E++
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG 114
Query: 434 DNVNKLLVGNKCDLTTKKVV 493
D+V +LVGNK DL K+ V
Sbjct: 115 DDVIIVLVGNKTDLADKRQV 134
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 126 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
FKL+ +G+ VGK+ L+ RF D + +Y +TIG+DF +T+
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTM 53
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +2
Query: 266 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVN 445
++KL+IWDTAGQER++++ YYR A+ I+VYD T S K W++E+ R A + +
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIV 122
Query: 446 KLLVGNKCDLTTKK 487
L GNK DL ++
Sbjct: 123 IALAGNKLDLAQER 136
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
KL+L+GDS VGKS L+LRF D + + STIG F +T+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTL 56
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 72.1 bits (169), Expect = 7e-14
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 245 DCRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVK-QWLEEID 421
DCR++GK+++L +WDTAGQE + + Y AH I++ + DS NV +W+EEI+
Sbjct: 48 DCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEIN 107
Query: 422 RYACDNVNKLLVGNKCDLTTKKV 490
C NV +LVG K DL + V
Sbjct: 108 T-LCPNVPFILVGMKADLRSDPV 129
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
KL+++GD GK+ LL F + Y+ T+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTV 41
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +2
Query: 254 LNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC 433
++ K + LQ+WDTAGQERF+++ ++YRGA ++VYD + SF + W +E A
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
Query: 434 ----DNVNKLLVGNKCDLTTKK 487
+ +L+GNK D+ +K
Sbjct: 112 PSNPETFPFILLGNKVDVEEQK 133
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/44 (34%), Positives = 32/44 (72%)
Frame = +3
Query: 120 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
+L K++++G+SGVGK+ ++ ++ + +++ Y +TIG DF + V
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEV 50
Score = 31.9 bits (69), Expect = 0.096
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 532 IPFLETSAKNSTNVEQAFMTMA 597
IP+ ETSAK + NV++AF T+A
Sbjct: 151 IPYFETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 62.5 bits (145), Expect = 6e-11
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2
Query: 245 DCRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE 415
D ++ K + LQ+WDTAGQERF+++ ++YRGA +IVY+ + SF +V+ W +E
Sbjct: 49 DVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
K++++GDSGVGK+CL+ +F + ++ Y +TIG DF + V
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDV 50
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 248 CRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRY 427
C ++G+ L + DTAGQE + + Y R G ++VY+ T + SF + + ++I R
Sbjct: 49 CEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRV 108
Query: 428 A-CDNVNKLLVGNKCDLTTKKVV 493
D +LV NKCDL ++VV
Sbjct: 109 KDKDTFPVVLVANKCDLEAERVV 131
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 126 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
+KL+++GD GVGKS L ++ + + Y TI
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 511 QYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 609
Q A+ + ++ETSAK NVE+AF ++ I+
Sbjct: 138 QLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIR 170
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 DCRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEID 421
D ++G +I+L +WDTAGQE + + S Y H I+I + +DS NV +WL E+
Sbjct: 53 DIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVS 112
Query: 422 RYACDNVNKLLVGNKCDL 475
C V +LV KCDL
Sbjct: 113 S-NCPGVKLVLVALKCDL 129
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
K++++GD GK+ LL F + + Y TI
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI 46
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +2
Query: 269 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNK 448
I +WDTAGQE+ + YY II++D T + ++ NV W ++ R C+N+
Sbjct: 58 ICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPI 116
Query: 449 LLVGNKCDLTTKKV 490
+L GNK D+ +KV
Sbjct: 117 VLCGNKVDVKERKV 130
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 126 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 233
FKL+L+GD G GK+ + R + + YI+T+GV+
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVE 45
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 DCRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEID 421
D ++G+ I+L +WDTAGQE + + Y +H ++I + +S NV++ W+ E+
Sbjct: 46 DVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVL 105
Query: 422 RYACDNVNKLLVGNKCDL 475
+ C N+ LLVG K DL
Sbjct: 106 HF-CSNLPILLVGCKVDL 122
Score = 38.7 bits (86), Expect = 8e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
KL+++GD GK+CLL+ F+ T+ E Y+ T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 55.6 bits (128), Expect = 7e-09
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +2
Query: 245 DCRLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEID 421
D ++G+ ++L +WDTAGQE + + Y +H I+I + DS NV++ W+ E+
Sbjct: 46 DVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVL 105
Query: 422 RYACDNVNKLLVGNKCDL-TTKKVVDFSTASN 514
+ C ++ LLV K DL K+++ + +N
Sbjct: 106 HF-CSSLPILLVACKADLRNDPKIIEELSKTN 136
Score = 38.7 bits (86), Expect = 8e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
KL+++GD GK+CLL+ F+ T+ E Y+ T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 55.2 bits (127), Expect = 9e-09
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 251 RLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI-DRY 427
+ G+ +I DTAGQ+ + + S + G HG ++VY T + SF VK ++I +
Sbjct: 48 KYKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHT 107
Query: 428 ACDNVNKLLVGNKCDLTTKKVVDFSTASNMRNNW 529
+ V ++VGNK DL ++ V + N W
Sbjct: 108 GTEWVPIVVVGNKSDLHMQRAVTAEEGKALANEW 141
Score = 29.9 bits (64), Expect = 0.39
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
++ ++G VGKS L +++ ++ + ESY TI
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTI 39
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 263 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI--DRYACD 436
K IK +WD GQ++ R + Y+ G G+I V D D + S +Q L I DR D
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 437 NVNKLLVGNKCDL 475
+ L++ NK DL
Sbjct: 123 CL-LLVLANKQDL 134
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 NGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYAC 433
N K I+L +WDTAGQE + + Y ++ I++ + S +NV ++W E+ + C
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHF-C 118
Query: 434 DNVNKLLVGNKCDL 475
+LVG K DL
Sbjct: 119 PRTPIVLVGLKADL 132
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
KL+++GD G GK+CLL+ F+ T+ E Y+ T+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTV 47
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 275 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKL 451
L ++DTAGQE + + Y ++ + T SF NVK+ W E+ + C V L
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHH-CPGVPCL 111
Query: 452 LVGNKCDL 475
+VG + DL
Sbjct: 112 IVGTQIDL 119
Score = 34.7 bits (76), Expect = 0.014
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTI 224
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV 36
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDN 439
+ I +WD GQ++ R + Y++ GII V D D++ S + L+ ++ +
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRD 118
Query: 440 VNKLLVGNKCDL 475
L+ NK DL
Sbjct: 119 ALLLVFANKQDL 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 129 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTV 251
K+ +IGDS +GK+ L++ + ++ E T+GV+F +T+
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTI 52
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 269 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDNVN 445
++ +D G ++ R + Y+ +GI+ + DC D + S K L+ + V
Sbjct: 64 VRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVP 123
Query: 446 KLLVGNKCD 472
L++GNK D
Sbjct: 124 FLILGNKID 132
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 33.5 bits (73), Expect = 0.032
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 269 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI 418
++ IWD GQ+ R +Y+ II V D D + L+E+
Sbjct: 60 LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQEL 109
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 108 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 233
P+YDYL ++ GD G G ++ + ES ++ I +D
Sbjct: 157 PKYDYLLPIIADGDMGFGSVTSTMKMT-KRFVESGVAMIHLD 197
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 516 CGTTGHSVPRDVSEELYER 572
CGT G++ P V++ELY +
Sbjct: 254 CGTVGYAAPEIVNDELYSK 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,365
Number of Sequences: 5004
Number of extensions: 47449
Number of successful extensions: 191
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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