Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0400
(728 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 3.9
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 3.9
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.8
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 6.8
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = -1
Query: 347 HVLLCSMMR*WF*TAPVQLCPIFVTLLSCH 258
H ++ M +Q+CPI++ S H
Sbjct: 111 HAIIACQMEFQLYPMDIQICPIYIESFSYH 140
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 22.6 bits (46), Expect = 3.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 380 DSFSNVKQWLEEIDRYACDN 439
+++ VK+W + +D YA +N
Sbjct: 270 ETYELVKEWRDFVDNYAEEN 289
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 207 SRCKYHQRILATDMISQLQSHQSGV 133
S C+ I +TD+I Q H GV
Sbjct: 520 SACRPRHEIRSTDVIPGTQEHVCGV 544
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 628 STGAAPAGHVKIDQGQPIDTGK 693
S P+G+++ G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 537 VPRDVSEELYE 569
VPRDVSE +Y+
Sbjct: 1265 VPRDVSEGIYD 1275
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,371
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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