Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0399
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    33   0.029
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.1  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.1  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.3  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.8  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 487 HHYLMPS*YLYYHSVKLFILENKTRNFNIVIFNQIYKEI 603
           HHYL+P   ++YH +    LE+    F+++I   ++ EI
Sbjct: 82  HHYLIPDSNIFYHCID--ALEHPNNFFDVIILQTVFSEI 118


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 446 FIAFNNSSQASKWFTIISCLHNTCTTIL*NCLFWRIKQGILILSYLIKFIKRFYCI 613
           F++   S++   +FT +S   + C  +      W IK G+ +  +   F+ RF+C+
Sbjct: 238 FLSCTISTKYVGFFTFLSIGLSVCLELW---YLWDIKTGLTVERFFQHFLARFFCL 290


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -1

Query: 454 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 314
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -2

Query: 561 PCFILQNKQFHRMVVQVL*RHEIMVNHLDACEELLNAI 448
           P  +LQN++FH+++ +   +HE  +  ++A ++ L  +
Sbjct: 347 PASLLQNEEFHKLIEERQRQHEERLKRINANKKALEEL 384


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 162 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 49
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   ATPWRYPWLMLFG*NSIIY*KWGPSFSPSC-LVLNYLRRCGKSSPSAFGC 153
           A+ W + W M+    + IY  W    +    L+L Y+R   KSS + F C
Sbjct: 189 ASIWAFDWPMMNLQETFIY--WDRCTNACLRLLLCYIRYTNKSSETGFSC 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,385
Number of Sequences: 5004
Number of extensions: 68236
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)