Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0399
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                29   2.6  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 28   6.0  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 311 PNVYIKTGGAE*ERPSPSVQSVGTIRGRADEAGC*MRPTSRNFRAGHELTVLQHPK 144
           P+V+ + G     RP P    +  +     E GC + P  R  R G  LT+ Q+ K
Sbjct: 176 PDVWPEPGMDWLVRPRPGGWPLPELIQEIVELGCHLAPVGRGKRTGKTLTIFQYKK 231


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 VSAGWSHSASSLICSTSYGTHTLHTGRGPLSLRAS 290
           ++ GW HS +  + +T  G HTL T   P+ L  +
Sbjct: 57  LTEGWCHSVNVRLTATKSGRHTL-TNAAPIKLHVT 90


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 374 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 279
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,730,185
Number of Sequences: 59808
Number of extensions: 488052
Number of successful extensions: 1287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)