Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0399
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    28   0.071
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   6.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 GWLVAFSIQPHLLYLVWYPHSAHWAR 268
           G+L+A  +QP L++ +W PH   W R
Sbjct: 162 GFLLAGIVQPFLIHWIWTPHG--WMR 185


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 454 CNKIYL*IGLNITIQKTLVFYS 389
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 454 CNKIYL*IGLNITIQKTLVFYS 389
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 454 CNKIYL*IGLNITIQKTLVFYS 389
           C++ YL I  NIT+++  +FY+
Sbjct: 223 CDEPYLDITFNITMRRKTLFYT 244


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 424 NITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMY 302
           N+T+     + S+Y  I  L    +  PT+   L    LMY
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMY 668


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 209 SIQPHLLYLVWY 244
           S+ P +LYL WY
Sbjct: 803 SVIPRILYLTWY 814


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 459 LNAIKSIYKLD*I*QYKKLSCF 394
           L+ +KS+Y+ +   Q KKL CF
Sbjct: 34  LSDLKSMYESNSEEQMKKLGCF 55


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 144 GGRAALPAAPEIIQNQTRWGERRSPLS 64
           GG    P    I+ ++  W ER  P+S
Sbjct: 58  GGVQVSPVQENIVIDKRPWWERYQPIS 84


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 195 GWSHSASSLICSTSYGTHTLHTGRGPLS 278
           GW    SS++C   Y  +   T  G +S
Sbjct: 532 GWLCGLSSMLCIPGYMIYIWFTTSGTIS 559


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 195 GWSHSASSLICSTSYGTHTLHTGRGPLS 278
           GW    SS++C   Y  +   T  G +S
Sbjct: 585 GWLCGLSSMLCIPGYMIYIWFTTSGTIS 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,682
Number of Sequences: 438
Number of extensions: 4983
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)