Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0399
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   1.6  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    28   4.9  
At5g54700.1 68418.m06812 ankyrin repeat family protein contains ...    28   6.5  
At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At3g50760.1 68416.m05558 glycosyl transferase family 8 protein c...    28   6.5  
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf...    28   6.5  
At1g43680.1 68414.m05018 hypothetical protein                          28   6.5  
At4g02310.1 68417.m00312 kelch repeat-containing F-box family pr...    27   8.6  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 138 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 230
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 244 PTLCTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTREFFVLLY 423
           PT+  L     HS   +++     GQT   G  D  ++FW +F    S+++  E   L +
Sbjct: 410 PTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEIGALSF 469


>At5g54700.1 68418.m06812 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 480

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 523 HSVKLF-ILENKTRNFNIVIFNQIYKEILLHLTILHRHPNGFTYTSMKTH 669
           +S+K+  +  +KT + +  I  Q + E + HL + H++   F + + K H
Sbjct: 98  NSIKILKVFSHKTPS-SFDILTQPHNETVFHLAVRHKNLKAFKFMAQKVH 146


>At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 506 HNTCT-TIL*NCLFWRIKQGILILSYLIKFIK 598
           HN CT  IL NC F R  Q  L LS+L K IK
Sbjct: 114 HNLCTCNILLNC-FCRCSQLSLALSFLGKMIK 144


>At3g50760.1 68416.m05558 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 285

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 295 KPEARSESG-PRPVCRVWVPYEVEQMRLD 212
           KP  R + G P P+  +WVPY++ + R D
Sbjct: 253 KPWVRLDDGRPCPLDALWVPYDLLESRFD 281


>At2g45300.1 68415.m05638 3-phosphoshikimate
           1-carboxyvinyltransferase /
           5-enolpyruvylshikimate-3-phosphate / EPSP synthase
           nearly identical to SP|P05466
          Length = 520

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 117 PEIIQNQTRWGERRSPLSVNNAILTKEH*PRISPWS 10
           P +I N ++  +R+SPLSV  ++ T++H PR  P S
Sbjct: 14  PSLISNLSKSSQRKSPLSV--SLKTQQH-PRAYPIS 46


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 446 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 330
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


>At4g02310.1 68417.m00312 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 511 YLYYHSVKLFILENKTRNFNIV---IFNQIYKEILL 609
           Y+YYH+V L   E+K + +++V    FN ++  I +
Sbjct: 251 YMYYHNVGLMWYESKEKQWSVVHGLEFNGVFNSIAI 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,662
Number of Sequences: 28952
Number of extensions: 350582
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)