Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0398
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    29   0.81 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.7  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   7.6  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 469 HECLQKNEKSVCIGSI---DCDLVXPKKCHELFPMLNVEDVLGGLWIP 603
           HECL K +K+ C G +   D D V   K      M    D LG LW P
Sbjct: 249 HECLLKLKKNACEGDLPDYDSDAVPGTKAGPRQDM----DTLGALWQP 292


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 462  LVLANNSEPHC 430
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 90  YTNYTCQCHLSDSLPTCF-FLVAIYYTTLIH 1
           YTNY+      +S   C+ F+  +Y+TTL +
Sbjct: 410 YTNYSAYSSPGESAGACYTFMHLLYHTTLTY 440


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 345 GLNAPTRPDECQRLPAPTFSFST 277
           GLN PT   E +  P P F+ ST
Sbjct: 135 GLNVPTGMKEAEAFPEPLFTPST 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,964
Number of Sequences: 5004
Number of extensions: 67174
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)