Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0398
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 33 0.21
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 32 0.36
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 32 0.36
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 32 0.48
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 30 1.5
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 29 2.6
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 3.4
06_03_1310 + 29238644-29240260 29 4.5
06_03_1294 - 29080347-29081447 29 4.5
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 29 4.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 5.9
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 28 5.9
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51... 28 5.9
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 5.9
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115... 28 7.8
07_03_0377 + 17442942-17443529,17443616-17444158 28 7.8
04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132 28 7.8
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -2
Query: 637 YRANAGLLHHHL----ESTGLQAHLQHSALEIIHDISLX*LSHNLCSRYRLTFHSSVN 476
YR G LH H+ E+TG Q + HS LE +H I++ ++H L R+ HS V+
Sbjct: 394 YRICDGQLHIHILDNHETTGPQRWIHHSELEEVHTITVERINH-LGDRHIRYPHSGVS 450
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 32.3 bits (70), Expect = 0.36
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 116 VFEPLR-CIGLRRKIRRLLVSTTIQSKGGNMQRGCNEGGCRVPPGQPGWGDRTVVVEKEK 292
VF PL +G R LVSTT + GG ++RG G R G G G+RT+V +
Sbjct: 124 VFVPLEEAVGCSGGGSRTLVSTT-GAGGGGVRRGKVFGEPRENLGAGGGGERTLVSDIGV 182
Query: 293 VGAGSR 310
G G R
Sbjct: 183 CGGGVR 188
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 323 GLVGAFKPTLAQVRLAQSSIRLLKELEARGRPTG--WKQCGSLLLARTRDRM 472
G A +P LA V A +L + EA RP G W +CG+++L +D++
Sbjct: 277 GSAAADRPRLAPVAAAMVDAQLPRAGEAIYRPQGHGWGRCGAMILGGGKDKV 328
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 293 VGA-GSRWHSSGLVGAFKPT-LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRD 466
VGA GSR G G +P+ + + ++Q S + L+ G G + C SLLL R
Sbjct: 95 VGAVGSRHDDGGGSGVVRPSGVTSIPVSQKSTNPFQGLDLAGERQGQQSCASLLLQAKRR 154
Query: 467 R 469
R
Sbjct: 155 R 155
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 354 ASVGLNAPTRPDECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCILPP 193
+SVG + + + A TFSF +T LS P W PPS HPR P
Sbjct: 462 SSVGASVAGQAPQTASTTALTFSFPASTTLS--PWW-----SPPSPHPRATSSP 508
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 300 APTFSFSTTTVLSPHPGWPGGTRQPPSLHPR 208
A FSFS+++ SP P P +R+PP L PR
Sbjct: 19 ARRFSFSSSSSPSPSPSPPSSSRKPP-LPPR 48
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 622 GLLHHHLESTGLQAHLQHSALEIIHDI 542
GL+ HHLE G HL++ +L H+I
Sbjct: 810 GLVDHHLEHIGKLVHLRYLSLRECHNI 836
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -3
Query: 333 PTRPDECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCILPPL 190
P P P + ST+ S P + PP+ HP +LPPL
Sbjct: 410 PPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPL 457
>06_03_1294 - 29080347-29081447
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 303 PAPTFSFSTT-TVLSPHPGWPGGTRQPPSLHPRC 205
P+P S S+T T + H WP +R+PP + P C
Sbjct: 104 PSPVASSSSTSTPMGSHWWWPA-SRRPPIIPPSC 136
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = -3
Query: 342 LNAPTRPDECQRLPAPTFSFST-TTVLSPHPGWPGGTRQPPSL----HP-RCILPPLLWM 181
+ A RP P P TV P G Q SL H R + PPLLW+
Sbjct: 47 IRASFRPTVAATPPVPELDLLLIVTVTRPDDDDDDGMSQEASLTRLGHTLRLVEPPLLWI 106
Query: 180 VVLTSNLLIFLRSPMHLSGSKTAY 109
VV N R+ L G++ +
Sbjct: 107 VVGAENTTATARAVNALRGTRVMF 130
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 303 PAPTFSFSTTTVLSPHPGWPGGTRQPP 223
PAP+ + +T + LSP P P G PP
Sbjct: 906 PAPSATANTASALSPPPPRPPGAPPPP 932
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +2
Query: 296 GAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEARG-----RPTGWKQCGSLLLART 460
G G W S G+ LA VR Q L E++ G GW + GSLL+ RT
Sbjct: 108 GQGYLWMSHRTPGSDTWELA-VRSKQLWEELAAEVDGLGGGGARERLGWMRTGSLLVGRT 166
Query: 461 RDRM-NVYRRMKSQSVSG 511
+ M + R K+ S +G
Sbjct: 167 SEEMATLEERTKALSQAG 184
>08_01_0072 -
513561-513926,514055-514189,514274-514417,514505-514744,
516325-516636
Length = 398
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 96 AGVLNRRFSSRLDALDYEEKLEDCLSVLPSKAKVVICSGGVMRAAVAYHL 245
+G+ N +S DY + L D L+ LP KV++ A+V+Y L
Sbjct: 152 SGIDNADTNSIATLADYSKPLIDYLNKLPENEKVILVGHSCGGASVSYAL 201
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 209 RGCNEGGCRVPPGQPGWGDRTVVVEKEKVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRL 388
RG + ++P PG + TVV E E AG RW+ + P +RLA S+
Sbjct: 10 RGYPDPWVKLP--SPGTREGTVVGENEGTHAGLRWYPNPAPAFSNPN--PLRLAYSTTAS 65
Query: 389 LKELEARGRPT 421
E+R P+
Sbjct: 66 TAWFESRVSPS 76
>12_01_0150 +
1155658-1156087,1156319-1156383,1156506-1156569,
1156988-1157115
Length = 228
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 426 HPVGLPRASSSLRSLIEDWASLT*ASVGLNAPT--RPDECQRLPAPTFS 286
H + LP SS +S + A++ S+ ++PT RP C LP P S
Sbjct: 33 HCISLPLLSSEHKSQTQMEAAVATPSLLFSSPTPRRPSSCLSLPPPCSS 81
>07_03_0377 + 17442942-17443529,17443616-17444158
Length = 376
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 57 LKGGIDKCNLYRVAGVLN-RRFSSRLDALDY-EEKLEDCLSVLPSKAKVVI---CSGGVM 221
++G C + G + F + + LD E++L DC ++ K C GG+M
Sbjct: 155 MQGACGSCWAFSTTGAVEGANFLATGNLLDLSEQQLVDCDHTCDAEKKTECDSGCGGGLM 214
Query: 222 RAAVAYHLANRGGVTE 269
A AY L + GG+ E
Sbjct: 215 TNAYAY-LMSSGGLME 229
>04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132
Length = 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 306 LPA-PTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCILPPLLWMVVLTSNLLIF 151
LP+ P + VL P W GGTR+P P+ +L VV S + F
Sbjct: 73 LPSVPNHNMHFVVVLHTPPNWAGGTREP---QPKATKRSMLRTVVSISEAVRF 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,808,269
Number of Sequences: 37544
Number of extensions: 539544
Number of successful extensions: 1839
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -