Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0398
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7) 31 1.1
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.5
SB_28663| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7) 30 1.5
SB_23911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 7.9
>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 272 VVVEKEKVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLL 448
+++E++K+ +G+ WHS+GL+ +P+ +V + + L K LE G GW + G L
Sbjct: 136 ILLERDKLTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLF 195
Query: 449 LARTRDRMNVYRRM 490
+A ++R++ Y+R+
Sbjct: 196 IANNKERLDEYKRL 209
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 502 CIGSIDCDLVXPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKG 669
C G ID ++ PK EL+P++NV+D+ G L+ PGDG DP +L R AT +G
Sbjct: 215 CYG-IDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGWASALTRGATKRG 269
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 144 YEEKLEDCLSVLPSKAKVVICSGGVMRAAVAYHLANRG 257
Y+ K S +P++A VV+ GG + + YHL G
Sbjct: 94 YQSKDSSTPSSVPAEADVVVIGGGSVGTSTLYHLTKMG 131
>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 177 LPSKAKVVICSGGVMRAAVAYHLANRG 257
L A+VVI GG + + AYHLA RG
Sbjct: 285 LKEDAEVVIIGGGCLGVSTAYHLAKRG 311
>SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7)
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 375 DWASLT*ASVGLNAPTRPDECQRLPAPTFSFSTTTVLSPH-PGWPGGTRQPPSLHPRCIL 199
+W LT S APT P E T +S+T V P P G R+ PSL P
Sbjct: 233 EWRFLTYRSAPAYAPTGPSEV----LDTSYYSSTAVAVPACPTAVPGDRESPSLAPASCR 288
Query: 198 PP 193
PP
Sbjct: 289 PP 290
>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 638
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 230 CRVPPGQPGWGDRTVVVEKEKVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELE 403
C + G P + V + + GSR SS K LAQ++L ++ IR+ +ELE
Sbjct: 365 CGMDSGMPDLREDAVSIANSRGSQGSR-ASSRKSALTKTLLAQLKLERAEIRIREELE 421
>SB_28663| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7)
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 230 CRVPPGQPGWGDRTVVVEKEKVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELE 403
C + G P + V + + GSR SS K LAQ++L ++ IR+ +ELE
Sbjct: 30 CGMDSGMPDLREDAVSIANSRGSQGSR-ASSRKSALTKTLLAQLKLERAEIRIREELE 86
>SB_23911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 472 ECLQKNEKSVCIGSIDCD 525
ECL++NEK++ IG +CD
Sbjct: 58 ECLEENEKTITIGEGNCD 75
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 138 LDYEEKLEDCLSVLPSKAKVVICSGGVMRAAVAYHLA-NRG 257
L YEE+ D L + ++A++VI A HLA NRG
Sbjct: 328 LKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMHLAKNRG 368
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 324 PDECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCI 202
P++C + P P + +TT P P P +Q P+ C+
Sbjct: 1838 PEKCCKQPEPQPALLSTTPTPPPPPQPHQQQQQPTCSTSCL 1878
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 330 TRPD--ECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCILPPL 190
T PD + + +P P S + PHP P +PP H +C + P+
Sbjct: 968 TVPDTVKAESMPVPASRQSKAPI--PHPSPPMQPAKPPRQHTQCSIDPV 1014
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 282 STTTVLSPHPGWPGGTRQPPSLHPRC 205
S + +PHP G +R PSLH C
Sbjct: 427 SPGNIRAPHPSLHGSSRTNPSLHDGC 452
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,164,445
Number of Sequences: 59808
Number of extensions: 566141
Number of successful extensions: 1653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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