Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0398
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    36   0.035
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    32   0.32 
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    32   0.32 
Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   3.0  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    27   9.2  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 183 SKAKVVICSGGVMRAAVAYHLANRG 257
           + A VV+C GG+   ++AYHLA RG
Sbjct: 20  ANADVVVCGGGISGTSIAYHLAKRG 44



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 550 ELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKG 669
           E +P L  EDV   L+ P D   DP  LC  L   A D G
Sbjct: 144 ERWPFLQTEDVQLALFSPEDVALDPVALCQHLALIAKDYG 183


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 299 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMN 475
           +G+ +HS GLV A  P      +   SI L  +LEA  G    ++  G++ LA    R+ 
Sbjct: 67  SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 126

Query: 476 VYRR 487
            +R+
Sbjct: 127 EFRK 130


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 299 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMN 475
           +G+ +HS GLV A  P      +   SI L  +LEA  G    ++  G++ LA    R+ 
Sbjct: 74  SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 133

Query: 476 VYRR 487
            +R+
Sbjct: 134 EFRK 137


>Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical
           protein F53C11.5c protein.
          Length = 830

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 620 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGL 531
           +P PS  I  PP+TS+  + GNNS ++ G+
Sbjct: 52  APMPSQKILPPPTTSAPSNSGNNSINYMGV 81


>Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
           protein F53C11.5b protein.
          Length = 891

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 620 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGL 531
           +P PS  I  PP+TS+  + GNNS ++ G+
Sbjct: 113 APMPSQKILPPPTTSAPSNSGNNSINYMGV 142


>Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical
           protein F53C11.5a protein.
          Length = 855

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 620 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGL 531
           +P PS  I  PP+TS+  + GNNS ++ G+
Sbjct: 77  APMPSQKILPPPTTSAPSNSGNNSINYMGV 106


>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 303 PAPTFSFSTTTVLSPHPGWPGGTRQPPSLHPRCILPP 193
           P P   F     + P PG P G   PP + P    PP
Sbjct: 100 PGPGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMPRPP 136


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 445  IIGKNKRPHECLQKNEKSVCIGSIDCDLV 531
            ++  N+ PH  LQK  +S C+    CD +
Sbjct: 3212 LVDNNRVPHTRLQKVLRSACVNQTTCDFI 3240


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 152 KIRRLLVSTTIQSKGGNMQRGCNEGGCRV-PPGQPG 256
           ++RR   +  +   GG  Q      GC   PPG PG
Sbjct: 75  RVRRQYATAAVSGGGGGCQCAAQASGCPAGPPGPPG 110


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 152 KIRRLLVSTTIQSKGGNMQRGCNEGGCRV-PPGQPG 256
           ++RR   +  +   GG  Q      GC   PPG PG
Sbjct: 75  RVRRQYATAAVSGGGGGCQCAAQASGCPAGPPGPPG 110


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 581 TSSTFSIGNNS*HFFGLTKSQSMLPIQTDFSFFCKHSCGLLFLPIIVNH 435
           T +T  I  N    F  T     +PIQ     F  HS  LLF+ + + H
Sbjct: 368 TMTTDVIDPNVSSIFAPTNPAGNIPIQCSLCPFSTHSTDLLFIHLAMQH 416


>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 GGNMQRGCNEGGCRVPPGQPGW 259
           G    RGCN   CR PPG PG+
Sbjct: 93  GRTANRGCN---CRGPPGPPGF 111


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 484 KNEKSVCIGSIDCDLV 531
           +N  S+CIG ++CDLV
Sbjct: 274 ENTVSICIGGVECDLV 289


>AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical
           protein C05C8.9a protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 447 NSEPHCFHPVGLPRASSSLRSLIEDWASLT*A-SVGLNAPTRPDECQRLPAPTFSFSTTT 271
           N        + L  +    RS ++D  ++  + SVGL+  T   E Q+   P     T  
Sbjct: 137 NGATETLKSISLDGSDIQERSSVDDEENIAESVSVGLSTETEQSELQKSSRPEKEVWTRN 196

Query: 270 VLSPHPG 250
           VLS  PG
Sbjct: 197 VLSLEPG 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,003
Number of Sequences: 27780
Number of extensions: 416789
Number of successful extensions: 1317
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)