Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0398
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g34358.1 68418.m04025 hypothetical protein 32 0.40
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 31 0.53
At3g60630.1 68416.m06784 scarecrow transcription factor family p... 31 0.70
At3g14830.1 68416.m01873 expressed protein 29 2.1
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 3.8
At1g77480.2 68414.m09023 nucellin protein, putative similar to n... 29 3.8
At1g77480.1 68414.m09022 nucellin protein, putative similar to n... 29 3.8
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 29 3.8
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c... 28 5.0
At2g23230.1 68415.m02774 terpene synthase/cyclase family protein 28 5.0
At1g20550.1 68414.m02561 expressed protein contains Pfam PF03138... 28 5.0
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 6.6
At5g67290.1 68418.m08484 FAD-dependent oxidoreductase family pro... 27 8.7
At5g63710.1 68418.m07997 leucine-rich repeat transmembrane prote... 27 8.7
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 8.7
>At5g34358.1 68418.m04025 hypothetical protein
Length = 116
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 659 VASLIRDIQSKCGSPTPSPGIHRPPSTSST 570
+A+ I+D QSK P+P P + R STSST
Sbjct: 1 MAAQIKDFQSKPRPPSPIPKVRRSGSTSST 30
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 21 ILQLKKNMLGGCLKGGIDKCNLYRVAGVLNRRFSSRLDALDYEEKLE 161
+L L+KN+L G L + + RV + N RF+ L L + L+
Sbjct: 181 VLSLRKNVLNGSLPSSLSSLSGLRVLALANNRFNGALPDLSHLTNLQ 227
>At3g60630.1 68416.m06784 scarecrow transcription factor family
protein scarecrow-like 6, Arabidopsis thaliana,
EMBL:AF036303
Length = 623
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 345 GLNAPTRPDECQRLPAPTFSFSTTTVLSPHPGWPGG 238
G + PT + R P+P S STTT+ S H G GG
Sbjct: 50 GFSEPTSVLDSVRSPSPFVSSSTTTLSSSHGGPSGG 85
>At3g14830.1 68416.m01873 expressed protein
Length = 476
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 536 GLTKSQSMLPIQTDFSFFCKHSCGLLFLPII 444
GL ++Q P FS+ CK+ CG P++
Sbjct: 331 GLLQAQGQYPGDMRFSYSCKNKCGTRITPMV 361
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 297 PTFSFSTTTVLSPHPGWPGGTRQ-PPSLHPRCILPPL 190
P+ SFS T+L P P T PPSL P PPL
Sbjct: 228 PSSSFSGNTLLCGLPLQPCATSSPPPSLTPHISTPPL 264
>At1g77480.2 68414.m09023 nucellin protein, putative similar to
nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
(nucellin: similar to aspartic protease and its specific
expression in nucellar cells during degeneration)
Length = 432
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -1
Query: 626 CGSPTPSPGIHRPPSTSSTFSIGNNS*HFFGLTKSQSMLPIQTDFSFFCKHSCGLLFLPI 447
CG +PG H PP T+ +G GL+ L I + C G FL I
Sbjct: 181 CGYDQQNPGPHPPPPTAGILGLGRGK---VGLSTQLKSLGITKNVIVHCLSHTGKGFLSI 237
>At1g77480.1 68414.m09022 nucellin protein, putative similar to
nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
(nucellin: similar to aspartic protease and its specific
expression in nucellar cells during degeneration)
Length = 466
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -1
Query: 626 CGSPTPSPGIHRPPSTSSTFSIGNNS*HFFGLTKSQSMLPIQTDFSFFCKHSCGLLFLPI 447
CG +PG H PP T+ +G GL+ L I + C G FL I
Sbjct: 181 CGYDQQNPGPHPPPPTAGILGLGRGK---VGLSTQLKSLGITKNVIVHCLSHTGKGFLSI 237
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 263 DRTVVVEKEKVGAGSRWHSSGLVGAFK--PTLAQVRLAQSSIRLLKELEARGRPTGWKQC 436
D ++ +GA + SSGL G + PT A + + S+ L K E PTGWK
Sbjct: 318 DSVAIIAANAIGA-IPYFSSGLKGVARSMPTSAALDVVAKSLNL-KFFEV---PTGWKFF 372
Query: 437 GSLL 448
G+L+
Sbjct: 373 GNLM 376
>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 487
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 435 HCFHPVGLPRASSSLRSLIEDWASLT*ASVGLNAPTR 325
+C H +GL S L+S ++D+ S ASVG A ++
Sbjct: 428 NCSHILGLEEPQSELQSALDDFMSQKNASVGGKAHSK 464
>At2g23230.1 68415.m02774 terpene synthase/cyclase family protein
Length = 611
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 481 QKNEKSVCIGSIDCDLVXPKKCHELFP 561
+K K VC+ + DCDLV ++ FP
Sbjct: 36 RKPTKPVCVKTTDCDLVESQRTFNKFP 62
>At1g20550.1 68414.m02561 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein -related' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 526
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 72 DKCNLYRVAGVLNRRFSSRLDALDY--EEKLEDCLSVLPSKAKVVICSG 212
+KC + RV VL +R + +L+ DY KL D L L + ++ SG
Sbjct: 203 EKCYINRVLPVLQKRHAVQLNKFDYRLSNKLRDDLQKLRFEPDMLAFSG 251
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 389 LKELEARGRPTGWKQCGSLLLARTRDR 469
L++L+A + TGW GS ++ T+DR
Sbjct: 322 LEQLDAMAKETGWFGYGSRIIITTQDR 348
>At5g67290.1 68418.m08484 FAD-dependent oxidoreductase family
protein contains Pfam profile PF01266: FAD dependent
oxidoreductase
Length = 406
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 192 KVVICSGGVMRAAVAYHLANRG 257
+V +C GGV+ AY LA +G
Sbjct: 41 RVFVCGGGVIGVCTAYFLAKKG 62
>At5g63710.1 68418.m07997 leucine-rich repeat transmembrane protein
kinase, putative
Length = 614
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 316 FIRPCWSIQANTCSGEACPVLN*AS*GA*GS 408
F+ PC+S TC G++ LN AS G G+
Sbjct: 77 FVSPCYSWSYVTCRGQSVVALNLASSGFTGT 107
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 342 LNAPTRPDECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHP 211
++ P PD PAPT +T P P PG T PP P
Sbjct: 113 VSPPPPPDASPSPPAPT---TTNPPPKPSPSPPGETPSPPGETP 153
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 333 PTRPDECQRLPAPTFSFSTTTVLSPHPGWPGGTRQPPSLHP 211
P+ P E P P+ S T T + P P + PPS +P
Sbjct: 146 PSPPGETPSPPKPSPSTPTPTTTTSPPPPPATSASPPSSNP 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,767
Number of Sequences: 28952
Number of extensions: 393584
Number of successful extensions: 1239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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