Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0397
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 89 3e-19
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 89 3e-19
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 3.1
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 24 9.6
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 9.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 9.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 24 9.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 24 9.6
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 9.6
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 24 9.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 9.6
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 24 9.6
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 88.6 bits (210), Expect = 3e-19
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = +3
Query: 237 ERGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
E+ G QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMC GRMFAP
Sbjct: 56 EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAP 104
Score = 74.1 bits (174), Expect = 7e-15
Identities = 35/62 (56%), Positives = 44/62 (70%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH ++ KN RQ Y VSE+AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 88.6 bits (210), Expect = 3e-19
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = +3
Query: 237 ERGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
E+ G QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMC GRMFAP
Sbjct: 56 EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAP 104
Score = 74.9 bits (176), Expect = 4e-15
Identities = 36/62 (58%), Positives = 44/62 (70%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH ++ KN RQ Y VSE+AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 370 PPQHMLPKAP*PDLWVPPP 314
PPQ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 955
Score = 24.6 bits (51), Expect = 5.5
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 67 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEE 246
+ L PL +V + + + A P+ P+ L+ + + KNS++LY +
Sbjct: 797 LQLEQQEPLQTVLNFLQDLLAFALHTPPYSLIEPLPDSLLKSLADLLLKNSQELYIILFN 856
Query: 247 AGHKPVPNHGVPD---VLLPEFR 306
P + D VL+P R
Sbjct: 857 GMVFTFPRDNISDASAVLIPLIR 879
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 370 PPQHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 263
PP P P P + VPP +TA PVP SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 191 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 69
SL+ S R+GAL++ + + C + T +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 61 SEMSLSVARPLVSVYSE 111
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 109 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 26
+N PT+ G P S +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 369 HHNTCYRRH-PDRTYGYHHHXHA 304
H + +RRH P RT+ HH H+
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHS 169
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 258 FVTSLLAHAVELPRVL 211
F+ S+L H++ LPR+L
Sbjct: 482 FLASILTHSIALPRLL 497
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXH 307
HH Y H +G+ HH H
Sbjct: 17 HHTHDYDHHNHDHHGHDHHSH 37
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 9.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = +2
Query: 278 YRTCCCPNSACXWWWYP 328
+R CCC W YP
Sbjct: 20 FRLCCCSPQTSHWCKYP 36
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 249 WSQTSAESWGT 281
W+Q SA SWGT
Sbjct: 559 WNQLSAPSWGT 569
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 354 YRRHPDRTYGYHH 316
YRR +TYGY+H
Sbjct: 411 YRREITQTYGYYH 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,353
Number of Sequences: 5004
Number of extensions: 28893
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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