Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0397
(387 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 97 4e-21
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 35 0.020
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 33 0.081
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.33
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 31 0.43
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 30 0.57
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 1.0
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 29 1.8
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 2.3
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 2.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 3.1
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 28 3.1
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16) 28 3.1
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 3.1
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 27 4.0
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 27 7.1
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 27 7.1
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 26 9.3
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 26 9.3
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 26 9.3
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 26 9.3
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 26 9.3
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 26 9.3
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 97.1 bits (231), Expect = 4e-21
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC GGRMFAP
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 101
Score = 64.5 bits (150), Expect = 3e-11
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = +1
Query: 82 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAGHK 258
ARP+++V++E E+ LP VFKAPIRPDLVN VH ++ KN RQ Y V++ AGH+
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 35.1 bits (77), Expect = 0.020
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -1
Query: 366 HNTCYRRHP-----DRTYGYHHHXHAEFGQQHVRYPMIRHWF 256
HN CYR H Y Y+ H H + + H YP RH++
Sbjct: 13 HNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 375 YVHHNTCYRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLL 241
Y HH+ C+ RH Y H+ H + + Y RH F+ +L
Sbjct: 33 YRHHHYCWYRHHYHYPCYRHYYHRCYRHHYCCY-RHRHNFIVIVL 76
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 33.1 bits (72), Expect = 0.081
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGG 371
GGW Q WG G+ + R GGG R G +G M GG
Sbjct: 258 GGWGQGPGGGWGRGQG-RGMGRGPGGGWGRGSGGGWGRMQGGG 299
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXHAEFGQQH-------VRYPMIRHWFVTSLL 241
HH+ +R + +HHH H E+ ++H + +IRH F+ ++
Sbjct: 324 HHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIII 373
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHXHAEFGQQHVRYPMIRH 262
YR H + +HHH H Q+H RH
Sbjct: 307 YRYHHHHHHRHHHHHHHHHHQRHRHRHRHRH 337
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 30.7 bits (66), Expect = 0.43
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 210 QELEAALLRERGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 335
+ E+AL ER W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 30.3 bits (65), Expect = 0.57
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLL 241
HH+ + RH R + YHHH + H +P FVT+++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHY----PHHHHHPCTIIIFVTTII 608
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 0.76
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 328 WVPPPRTRGIRATARPVPHD 269
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 384 VRTYVH-HNTCYRRHPDRTYGYHHHXHAEFGQQHVRY 277
+R Y H CYRR R + YHHH + +RY
Sbjct: 215 LRCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRY 249
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGG 371
GGW + S WG G R +GGG R G +G GG
Sbjct: 6 GGWGRGSGGGWGQGPG-GGWGRGQGGGMGRGPGGGWGRGSGGG 47
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGG 371
GGW + S WG R++GGG R G +G M GG
Sbjct: 38 GGWGRGSGGGWG---------RMQGGGMGRGPGGGWGRMQGGG 71
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHXHAEFGQQHVRYPMIRH 262
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHXHAEFGQQHVRYPMIRH 262
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 58 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCV 237
S +M L R + Y+E ++ + LP V AP+ D+V +V S K S + Y V
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFY-V 530
Query: 238 SE 243
SE
Sbjct: 531 SE 532
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 375 YVHHNTCYRRHPDRTYGYHHHXH 307
Y HH+ +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHH 313
HH+ YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 149 GRGLAAPCTVSLFSEYTDTKGRATDRLI 66
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXH 307
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 373 RPPQHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 269
RPP H + P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 360 TCYRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLL 241
TC+ HP + Y H+ H F Q H + RH+ TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
Length = 711
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 197 CTSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKG 87
C + G +T+G L +PC SLF + D G
Sbjct: 432 CRETCQQGNSQVCSTDGVTLQSPCHASLFHRHVDYPG 468
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -1
Query: 381 RTYVHHNTCYRRHPDRTYGYHHHXHAEFGQQHVRY 277
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
Score = 27.1 bits (57), Expect = 5.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXH 307
HH+ + H + YHHH H
Sbjct: 229 HHHNHHHHHHHHYHHYHHHHH 249
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 378 TYVHHNTCYRRHPDRTYGYHHHXHA 304
TY H +T R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 375 YVHHNTCYRRH-PDRTYGYHHHXHAEFGQQH 286
Y HH+ Y H P Y +HHH H + QQH
Sbjct: 297 YHHHHPPYHYHYPPLPYRHHHH-HNRY-QQH 325
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 375 YVHHNTCYRRHPDRTYGYHHHXHAEFGQQH 286
Y HH+ + +H + +HHH H H
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHH 286
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/47 (19%), Positives = 23/47 (48%)
Frame = -1
Query: 381 RTYVHHNTCYRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLL 241
R + HH+ ++ + + + +HHH H H ++ H + +++
Sbjct: 256 RYHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIINII 302
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 375 YVHHNTCYRRHPDRTYGYHHHXH 307
Y HH+ + H + +HHH H
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRH 180
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 381 RTYVHHNTCYRRHPDRTYGYHHHXHAEFGQQH 286
R Y +H+ Y H + Y +HHH H H
Sbjct: 85 RDYFYHSYNYH-HKWQHYHHHHHYHHHLDYDH 115
>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
Length = 131
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -1
Query: 384 VRTYVHHNTCYRRHPDRTYGYHHHXH 307
+ + +H HP + YHHH H
Sbjct: 4 ITLHYYHRHHQHHHPPSSPSYHHHRH 29
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 375 YVHHNTCYRR-HPDRTYGYHHHXHAEFGQQHVRYPMI 268
Y HH + H + + +HHH H H R+ +I
Sbjct: 1032 YHHHRRRHHHYHHQQQHQFHHHHHHTHYNYHYRHFLI 1068
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 384 VRTYVHHNTCYRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLLAHA 232
V Y+ H TC+R+H R Y H H + + VT ++HA
Sbjct: 77 VTRYMSHATCHRQHVTR-YMSHATCHTLHVTGNTSHATCHTLHVTRYMSHA 126
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 249 WSQTSAESWGTGRAVARIPRVRGGGTHRSGQ 341
W +T + WG R R GTH SG+
Sbjct: 677 WGRTGRDGWGWTHGSGRTGRDARVGTHGSGR 707
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = -1
Query: 381 RTYVHHNTCYRRHPDRTYGYHHHXHAEFGQQH 286
R + HH+ + H + HHH H + H
Sbjct: 44 RYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHH 75
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 RERGGWSQTSAESWGTGRAVARIPRV-RGGGTH 329
RERG +Q AE TG A AR PR R GTH
Sbjct: 305 RERGARTQGVAEIGHTGSA-AREPRASRRSGTH 336
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHXHAEFGQQHVRYPMIRHW 259
+R+H +R +HHH H +P H+
Sbjct: 190 HRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHY 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,098
Number of Sequences: 59808
Number of extensions: 258215
Number of successful extensions: 859
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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