Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0397
(387 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 92 1e-19
U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical pr... 30 0.49
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 28 2.0
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 2.0
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 2.0
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 28 2.6
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 6.1
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 6.1
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 27 6.1
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 27 6.1
U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical pr... 27 6.1
U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin (dro... 27 6.1
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 6.1
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 6.1
Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 26 8.1
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 26 8.1
AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine r... 26 8.1
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/44 (93%), Positives = 41/44 (93%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC GG MFAP
Sbjct: 60 QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAP 103
Score = 56.4 bits (130), Expect = 7e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +1
Query: 82 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAG 252
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58
>U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical
protein F54H5.5 protein.
Length = 662
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 321 HHHXHAEFGQQHVRYPMIRHWFVTSLLAHAVE--LPRVLXHRNVHIID 184
H + F + V P+ WFVTSL+ AVE + + H V ++D
Sbjct: 379 HGVINCGFSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLD 426
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -1
Query: 336 RTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLLAHAVELPRVLXHRNVHIIDQVRTYGRLE 157
R GY+ + RYP +R + L + A LPR++ R+ H + R + R
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433
Query: 156 YERK 145
Y +
Sbjct: 1434 YSNE 1437
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 254 TNQC--RIMGYRTCCCPNSAC 310
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 254 TNQC--RIMGYRTCCCPNSAC 310
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +1
Query: 67 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVS 240
MS++V P +S V + + F++ P ++ D H+ + + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 29
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 370 PPQHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 272
PP P AP P +++PPP G R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 370 PPQHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 272
PP P AP P +++PPP G R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 173 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 60
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 173 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 60
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 145 LPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAGHKP 261
+P + K + DLV VH+SM S + S H P
Sbjct: 249 IPNIVKCDLPADLVRGVHISMQPPSPAVSAFSPRRYHHP 287
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 145 LPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEAGHKP 261
+P + K + DLV VH+SM S + S H P
Sbjct: 249 IPNIVKCDLPADLVRGVHISMQPPSPAVSAFSPRRYHHP 287
>U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical
protein F19C7.8a protein.
Length = 431
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 333 TYGYHHHXHAEFGQQHVRYPMIR 265
T+GYHH+ HA Q + + R
Sbjct: 67 THGYHHNPHARLSQPDIHSAIYR 89
>U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin
(drosophila neuroligin-like) homolog protein 1 protein.
Length = 730
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -1
Query: 336 RTYGYHHHXHAEFGQQHVRYPMIRHWFVTSLLAH 235
R + YH + + +F Y RHW++ H
Sbjct: 574 RRFSYHQNPNFQFDGSWAAYEPRRHWYINFNYTH 607
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 182 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 69
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 182 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 69
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
>Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical
protein ZK262.8 protein.
Length = 362
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 354 YR-RHPDRTYGYHHHXHAEFGQQHVRYPMIRHWF 256
YR + PD HH F QH R+P IR F
Sbjct: 38 YRTKQPDNRKRALHHPRLRFRCQHPRFPPIRVLF 71
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 379 NIRPPQHMLPKAP*PDLWVPPPRT 308
NIRPP PK PD PPP+T
Sbjct: 312 NIRPPIAQKPKLIQPDT-TPPPKT 334
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 300 IPRVRGGGTHRSGQGAFGNMCCGG 371
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine
receptor, class z protein83 protein.
Length = 314
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/51 (17%), Positives = 29/51 (56%)
Frame = -1
Query: 330 YGYHHHXHAEFGQQHVRYPMIRHWFVTSLLAHAVELPRVLXHRNVHIIDQV 178
Y Y + + + ++ + +P ++H++ LA+ + + ++ H +H+I ++
Sbjct: 40 YKYLYEINRDRDKKMLLFPTVQHFYEMVQLAYFLFVFSIILHTLLHVIHEI 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,841,188
Number of Sequences: 27780
Number of extensions: 182981
Number of successful extensions: 622
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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