Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0397
(387 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 89 7e-19
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 89 7e-19
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 31 0.36
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 30 0.47
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 29 1.1
At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to a... 29 1.4
At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to e... 29 1.4
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 28 2.5
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 28 2.5
At1g62880.1 68414.m07100 cornichon family protein contains Pfam ... 28 2.5
At1g76010.1 68414.m08825 expressed protein 27 3.3
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 27 3.3
At5g49700.1 68418.m06153 DNA-binding protein-related contains Pf... 27 4.4
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 4.4
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 4.4
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 5.8
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 26 7.6
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 89.4 bits (212), Expect = 7e-19
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMC GGRMFAP
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAP 110
Score = 58.4 bits (135), Expect = 2e-09
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 76 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVSEEA 249
+ ARPLV+V + T Q LP V AP+RPD+VN VH + NSRQ Y VS++A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 250 GHK 258
GH+
Sbjct: 65 GHQ 67
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 89.4 bits (212), Expect = 7e-19
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFAP 386
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMC GGRMFAP
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAP 109
Score = 60.5 bits (140), Expect = 4e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +1
Query: 67 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCVS 240
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH + NSRQ Y VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 241 EEAGHK 258
++AGH+
Sbjct: 61 KKAGHQ 66
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 30.7 bits (66), Expect = 0.36
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 142 PLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCV 237
P+PF K+P +PD++ H + NSR L+C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 29.9 bits (64), Expect = 0.62
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 142 PLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCV 237
P+PF K+P +PD++ H + NS+ L+C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 30.3 bits (65), Expect = 0.47
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 91 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQLYCV 237
LV +++ SE+++ PLPF K+P +PD++ H + NS+ + C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 369 HHNTCYRRHPDRTYGYHHHXHAEF 298
HH+ Y H YGY +H H +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to
alpha-expansin 4 precursor GI:16923355 from [Cucumis
sativus]; alpha-expansin gene family, PMID:11641069
Length = 260
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 154 RTEGAWLHPAPSHSSLNTPT-LKVGLPIDSFRYFSEAIPPKYTLIAVIKT 8
+TEG W +P H L+ P LK+ +Y + +P KY I+ +T
Sbjct: 122 KTEGVWCNPPQKHFDLSLPMFLKIA------QYKAGVVPVKYRRISCART 165
>At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to
expansin2 GI:4884433 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 259
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 154 RTEGAWLHPAPSHSSLNTPT-LKVGLPIDSFRYFSEAIPPKYTLIAVIKT 8
+TEG W +P H L+ P LK+ +Y + +P KY I+ +T
Sbjct: 121 KTEGVWCNPPQKHFDLSLPMFLKIA------QYKAGVVPVKYRRISCART 164
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 352 PKAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQP 245
P A P++ PPP R IRA A +PH+S + P
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNSQAIILSP 80
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 240 RGGWSQTSAESWGT---GRAVARIPRVRGGGTHRSGQGAFG 353
RGG +S G+ G + IP + GGGTHRSG + G
Sbjct: 99 RGGGGSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138
>At1g62880.1 68414.m07100 cornichon family protein contains Pfam
profile: PF03311 cornichon protein
Length = 137
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 285 VRYPMIRHWFVTSLLAHAVELPRVLXHRNVHIIDQVRTYGRLEYERK 145
V Y + HWF+ L + L R H+ID + L++E+K
Sbjct: 61 VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKK 107
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 240 RGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCG 368
RGG+ + G GR R R RGGG R G G F N G
Sbjct: 305 RGGYD--GPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 222 AALLRERGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFA 383
A+LL Q + + W AV R GGG ++ A GN+ CG FA
Sbjct: 297 ASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFA 350
>At5g49700.1 68418.m06153 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 276
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 270 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCCGGRMFA 383
S GTG + P V GGG G CG M++
Sbjct: 219 SAGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYS 256
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 66 NESIGSPTFSVGVFREE*DGAGCSQAPSVRIQGAHTSGPGQ*CARF 203
N +I +PT S+ G S V + GAHT G + C F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 32
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 145 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 32
G W+H SH+ ++ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 382 ANIRPPQHMLPKAP*PDLWVPPPRTRGIRATARPVP 275
A + P + +L K P +VPPP+ +PVP
Sbjct: 314 APLTPIEKLLEKIPSKRPYVPPPKASVATKEVKPVP 349
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,533
Number of Sequences: 28952
Number of extensions: 179664
Number of successful extensions: 717
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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