Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0396
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   1.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   1.9  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   4.4  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.7  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.7  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 348 RLYFPHNVSHHHHSCTSVMLGA 413
           R+Y   + +HHHH   +   GA
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGA 80


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 348 RLYFPHNVSHHHHSCTSVMLGA 413
           R+Y   + +HHHH   +   GA
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGA 80


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 357 FPH-NVSHHHHSCTSVMLGA 413
           +P+ + +HHHH   +   GA
Sbjct: 2   YPYVSAAHHHHQAAAAAFGA 21


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 357 FPH-NVSHHHHSCTSVMLGA 413
           +P+ + +HHHH   +   GA
Sbjct: 2   YPYVSAAHHHHQAAAAAFGA 21


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 613 SKKNILPNYLRSSHPIF 563
           S  ++ PNY+R++  +F
Sbjct: 58  SSSSVFPNYIRTTSMVF 74


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 613 SKKNILPNYLRSSHPIF 563
           S  ++ PNY+R++  +F
Sbjct: 58  SSSSVFPNYIRTTSMVF 74


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory
          receptor candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 60 WLLEPMDIYNVNAPPTLRYK 1
          WL  P  + N   P +LR+K
Sbjct: 7  WLTPPHSLGNTVTPVSLRFK 26


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 432 VGNSLSAPLALLMCMSDGDDSHYVESTIVCLQDKKINVNNIS 307
           +G +++A LA+ +     D++HY  + +     KK+ +  +S
Sbjct: 319 IGLTINAGLAIFILYFICDEAHYASNCLRVQFQKKLLLVELS 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,506
Number of Sequences: 336
Number of extensions: 4875
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)