Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0396
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    28   1.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   1.6  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   4.8  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   6.3  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   8.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.3  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 622 VICSKKNILPNYLRSSHPIFSMTP 551
           +ICS+ N LPNY   +  I  +TP
Sbjct: 328 IICSRANNLPNYFELNKCIAKLTP 351


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +2

Query: 95  N*AIKKRQNIEIGEAIAVNAGTKQLNHSKNTLPISA-----NLHNEAITLLPAEVGCELC 259
           N +IK+ +N      +      KQLNH    LP +      +L N+AI+++P +   +L 
Sbjct: 105 NDSIKETKNENFRMDVLETYKCKQLNHQTTHLPTNTVLKKRSLFNDAISIVPNKKK-QLV 163

Query: 260 SAVSSS 277
           SA+S++
Sbjct: 164 SAISTN 169


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 650 SQISATFCIGNMFQEEYSAELFEIISSHFFHDTIPTIIRSNYLEYCFDEPFSMG 489
           S I A+ C       ++  ++FEI+   FF   I   I S++L Y F   +  G
Sbjct: 317 SAIGASLCFN---ASKFGKKIFEILRLMFFSGIIFGFIGSSFLLYVFQYAYPGG 367


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 580 ISNNSAEYSSWNILPIQNVADIWESQTKDRSH 675
           I N + EY    ++PI ++ D+ E    + SH
Sbjct: 253 IYNTNREYKPVKVIPIADIQDVAEINVPESSH 284


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 93  GG*AHSPPGVKWLLEPMDIYN 31
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = -1

Query: 447 RDPFVVGNSLSAPLALLMCMSDGDDSHYVESTIVCLQDKKINVNNISSRMECHHCNCDED 268
           R P++ GN+  A     +  SD   S+  ES    L D   N+N   S  E    + D D
Sbjct: 161 RPPWI-GNNDHATDKENLLESDASSSNDSESE---LTDSADNMNESDSESEIESSDSDHD 216

Query: 267 TAEHSSHPTSAGRSVMASL 211
             E+S       R+ + SL
Sbjct: 217 DGENSDSKLDNLRNYIVSL 235


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 426 NSLSAPLALLMCMSDGDDSHYVESTIVCLQDKKINVNNISSRMECHHCNCDEDTAEH 256
           N L   L L     D  D  Y +S    L  KKI V N+SS++    CN   + + H
Sbjct: 726 NDLEKSLVLSERSKDELDESY-KSLQEQLASKKIEVQNVSSQLSI--CNSQLEQSNH 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,541
Number of Sequences: 5004
Number of extensions: 74040
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)