Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0396
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0055 + 12074512-12076155                                         29   5.0  
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314           28   6.6  
02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578           28   6.6  
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993...    28   6.6  
12_02_1054 - 25721220-25721582,25723163-25723727,25724162-257244...    28   8.7  
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521...    28   8.7  
03_02_0906 - 12295278-12295571                                         28   8.7  
03_02_0416 - 8276433-8276503,8276794-8276945,8277696-8277775,827...    28   8.7  

>01_03_0055 + 12074512-12076155
          Length = 547

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 342 SRRLYFPHNVSHHHH 386
           SRR+Y  H V HHHH
Sbjct: 350 SRRIYGGHRVHHHHH 364


>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
          Length = 147

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 324 NVNNISSRMECHHCNCDED 268
           NV+N +SR+EC+ CN   +
Sbjct: 122 NVHNFASRIECYRCNAPRE 140


>02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578
          Length = 166

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 324 NVNNISSRMECHHCNCDEDT 265
           N +N +SRMEC  CN   D+
Sbjct: 143 NEHNFASRMECFRCNAPRDS 162


>02_01_0015 -
           98311-98412,98635-98707,98830-98921,99139-99230,
           99363-99432,99683-99781,100008-100093,100541-100655,
           100853-100918,101064-101143,101226-101301,101915-102151,
           102559-102590,102993-103047,103384-103498,104497-104579,
           105182-105232,105740-105802,105945-106010,106144-106279,
           106503-106591,106844-106964,107138-107340,107434-107820
          Length = 862

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -1

Query: 402 LLMCMSDGDDSHYVESTIVCLQDKKINVNNISSRMECHHCNCD-----EDTAEHSSHPTS 238
           +LM + + +  + VEST   L+ K I +  +  +++   C+C      EDT    ++  S
Sbjct: 460 ILMSVFNVESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTFVEQNNDVS 519

Query: 237 AGR 229
           +G+
Sbjct: 520 SGQ 522


>12_02_1054 -
           25721220-25721582,25723163-25723727,25724162-25724476,
           25724492-25724772
          Length = 507

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 649 PKYLLRFV*VICSKKNILPNYLRSSHPIFSMTPSPP*FVQT 527
           P  LLR    +C   +     +R  HP+FS  P PP  V T
Sbjct: 16  PADLLRCA-AVCRSWHAAAASVRERHPLFSRRPPPPCLVYT 55


>04_01_0399 -
           5214183-5214206,5215437-5215502,5219537-5219635,
           5219746-5219817,5219918-5220491,5220575-5220687,
           5220842-5220941,5221059-5221181,5221268-5221335,
           5221461-5221610,5221715-5221858,5222097-5222288,
           5222710-5222794,5222892-5223043,5223138-5223296,
           5223552-5223605,5223698-5223836,5223955-5224088,
           5224200-5225117
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 225 VMASLCKLAEIGKVFFEWFNCLVPALTA 142
           V  S  +  EIGK+  EW  CLVP +++
Sbjct: 297 VRFSTNRAGEIGKLSTEWTKCLVPLVSS 324


>03_02_0906 - 12295278-12295571
          Length = 97

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 360 PHNVSHH-HHSCTSVMLGAQINCCLPRRGLFKP 455
           P  ++HH +HS T+  + A    CLPRR   +P
Sbjct: 10  PFGLTHHANHSTTAQCMTALPTRCLPRRATCQP 42


>03_02_0416 -
           8276433-8276503,8276794-8276945,8277696-8277775,
           8277913-8277986,8280046-8280250
          Length = 193

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -1

Query: 378 DDSHYVESTIVCLQDKKINVNNISSRMECHHCNCDEDTAEHSSH--PTSAGRSVMASLCK 205
           D  H  E  IV L +KK      S   EC     D+   EH S   P  +G   + ++ K
Sbjct: 116 DHLHGWEDDIVGLVEKKHGNRKFSISFECETLKADKAADEHISKYMPNLSGMDAIVNIGK 175

Query: 204 LAEIG 190
           ++  G
Sbjct: 176 MSISG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,642
Number of Sequences: 37544
Number of extensions: 497062
Number of successful extensions: 1371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)