Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0396
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0) 33 0.31
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 29 2.9
SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2) 29 3.8
SB_5682| Best HMM Match : PH (HMM E-Value=0.23) 29 3.8
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 23 6.2
SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7) 28 6.7
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24) 28 8.9
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) 28 8.9
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34) 28 8.9
SB_15983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_44569| Best HMM Match : Gal_Lectin (HMM E-Value=4.5) 28 8.9
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.9
SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 939
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 722 ERSSTSRMD-RFCRTKIWLRSLVWDSQISATFCIGNMFQEEYSAELFEIISSHFF 561
E + S+ D + C + + ++SL W + + CI N Q Y E F I S F
Sbjct: 30 EHTLNSKQDYKLCNSSLVMKSLEWRTVLFIVLCIINSSQALYEKETFPSIKSRTF 84
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 82 SSSTQLSNKKKTEHRNRRGDRGQCWNQTIEPLKEHLANFGQFA*RGHNASTSRSRVRA 255
SS ++ ++ ++ R+R R + W+ T + H + R H S SRSR+R+
Sbjct: 407 SSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRS----RSHTRSRSRSRIRS 460
>SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)
Length = 390
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 354 TIVCLQDKKINVNNISSRMEC-HHCNCDEDTAEHSSHPTSAGRSVMASLCK 205
T C+Q K N R C C C E+ + SHP S G++V S C+
Sbjct: 40 TYFCVQCNKGYSN---PRHRCLRECTCFENHRKVKSHPDSRGKTVRWSYCQ 87
>SB_5682| Best HMM Match : PH (HMM E-Value=0.23)
Length = 184
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 420 LSAPLALLMCMSDG--DDSHYVESTIVCLQDKKINVNNISSRMECHHCNCDEDTAEHS 253
L P+ + SDG DD V S + L + + + +S+R C H N EH+
Sbjct: 45 LPTPVNIHRSFSDGESDDDAAVTSPVTSLDRRHAHCHTMSTRRVCWHRNTSVSMHEHA 102
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 23.4 bits (48), Expect(2) = 6.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 354 YFPHNVSHHHH 386
Y+ H++ HHHH
Sbjct: 158 YYHHHLLHHHH 168
Score = 23.4 bits (48), Expect(2) = 6.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 363 HNVSHHHHSCTSV 401
H+ HHHHS T++
Sbjct: 176 HHHRHHHHSFTTI 188
>SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7)
Length = 367
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFHDTIPTIIRSNYLEYCFDEPFSMGGSE 480
C+G + Y+++LFE+I SH H YL + D S+G +E
Sbjct: 309 CLGPLLFSIYASKLFEVIKSHLPHANAYADDTQLYLSFKADS--SVGETE 356
>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
Length = 1039
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFH 558
C+G + Y+++LFE+I SH H
Sbjct: 263 CLGPLLFSIYASKLFEVIKSHLPH 286
>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
Length = 2279
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 176 SKNTLPISANLHN-EAITLLPAEVGCE--LCS---AVSSSQLQWWHSILDEILFT 322
S + L + AN+H + ++P C LC+ A S S L W + +D+I+FT
Sbjct: 1806 SSSRLLVKANMHQGDGRLIIPGVQCCSIALCAILRATSKSPLLWTPADMDDIIFT 1860
>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
Length = 899
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFH 558
C+G + Y+++LFE+I SH H
Sbjct: 429 CLGPLLFSIYASKLFEVIKSHLPH 452
>SB_15983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFH 558
C+G + Y+++LFE+I SH H
Sbjct: 76 CLGPLLFSIYASKLFEVIKSHLPH 99
>SB_44569| Best HMM Match : Gal_Lectin (HMM E-Value=4.5)
Length = 162
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFH 558
C+G + Y+++LFE+I SH H
Sbjct: 76 CLGPLLFSIYASKLFEVIKSHLPH 99
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = -1
Query: 468 LSSNEV*RDPFVVGNSLSAPLALLMCMSDGDDSHYVESTIVCLQDKKINVNNISSRMECH 289
++SNEV +DP ++ S + ++ VE+ + + ++ + + H
Sbjct: 2036 MASNEVEKDPSIISESAKEQIEQFQKSAESPTQSLVETFVQVQEPVSVDARDYAEIAIPH 2095
Query: 288 HC-NCDE---DTAEHSSHPTSAGRSVMASLCKLAEIGKV 184
+C C E +E S H + S +S C + GK+
Sbjct: 2096 NCIECGEVYLTFSEMSKHMKAVHNSRPSSTCHVC--GKI 2132
>SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 629 CIGNMFQEEYSAELFEIISSHFFH 558
C+G + Y+++LFE+I SH H
Sbjct: 200 CLGPLLFSIYASKLFEVIKSHLPH 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,470,839
Number of Sequences: 59808
Number of extensions: 573847
Number of successful extensions: 1545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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