Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0396
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.96 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.96 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 155  GTKQLNHSKNTLPISANLHNEAITL 229
            G ++LNH K TLP + N + EA  L
Sbjct: 1256 GREELNHGKRTLP-AKNTYFEATDL 1279


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 155  GTKQLNHSKNTLPISANLHNEAITL 229
            G ++LNH K TLP + N + EA  L
Sbjct: 1252 GREELNHGKRTLP-AKNTYFEATDL 1275


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 626 YKT*QIFGSPRPKIEAIFLYGKICPCV 706
           YK  Q F    P +E  F  G++  C+
Sbjct: 149 YKARQRFAKVEPALEEQFATGRVLACI 175


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 599 SAELFEIISSHFFHD 555
           S  +F++I+ H FHD
Sbjct: 170 SGTVFDLINIHLFHD 184


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 539 LWWGWCHGKNG 571
           LWWGW    +G
Sbjct: 231 LWWGWLAFNSG 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,322
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)