Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0396
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ... 33 0.19
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt... 33 0.25
At3g04590.2 68416.m00489 DNA-binding family protein contains a A... 33 0.25
At3g04590.1 68416.m00488 DNA-binding family protein contains a A... 33 0.25
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.45
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ... 30 1.4
At3g28480.1 68416.m03558 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.4
At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protei... 29 2.4
At1g55325.1 68414.m06320 expressed protein 29 4.1
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 28 7.2
At3g03280.1 68416.m00325 expressed protein 27 9.6
At2g39480.1 68415.m04845 ABC transporter family protein related ... 27 9.6
>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
NAGLU family contains Pfam profile: PF05089
alpha-N-acetylglucosaminidase (NAGLU)
Length = 806
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 461 DERRVIAQNP-PWRKVHQNNIQDSLNELWWGW 553
D +R+ + P PW +QN + S + +WWGW
Sbjct: 144 DSKRIFIRRPVPWN-YYQNVVTSSYSYVWWGW 174
>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
identical to GI:20302857
Length = 510
Score = 32.7 bits (71), Expect = 0.25
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +2
Query: 206 LHNEA-ITLLP-AEVGCELCSA--VSSSQLQWWHSILDEILFTLIFLSCKQTIVLST*CE 373
LH A +TL+P A +G +L +A +++QL+ W+ +D F F S + I LS
Sbjct: 247 LHRAADLTLVPSAAIGKDLIAAGATAANQLRLWNKGVDSESFNPRFRSQEMRIRLSNGEP 306
Query: 374 SSPSLMHISNARGADKLLPTTKGSLQTSFDERRV 475
P ++H+ G +K L K S+ E R+
Sbjct: 307 EKPLVIHVGRI-GVEKSLELLK-SVMDKLPEARI 338
>At3g04590.2 68416.m00489 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 411
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 354 YFPHNVSHHHHSCTSVMLGAQINCCLP--RRGLFKPR 458
YF H + HHHH T+V A +P GLF P+
Sbjct: 35 YFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQ 71
>At3g04590.1 68416.m00488 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 308
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 354 YFPHNVSHHHHSCTSVMLGAQINCCLP--RRGLFKPR 458
YF H + HHHH T+V A +P GLF P+
Sbjct: 35 YFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQ 71
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 619 ICSKKNILPNYLRSSHPIFSMTPSPP*FVQTILNIVLMNLSPWGVLSYYTPF 464
IC+ K L LR H + S +PP FV + +++ NLSP +++ F
Sbjct: 128 ICTIKRFLLKLLRQVHTVQSKDETPPDFVDEV--VIVSNLSPLTKIAHIKGF 177
>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 566
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 381 GDDSHYVESTIVCLQDKKINVNNISSRMECHHCNC 277
GD + E + D + NN SSR CH+C+C
Sbjct: 498 GDIIYAKEGKHIIYDDNSLLSNNSSSRPLCHNCHC 532
>At3g28480.1 68416.m03558 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 316
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 535 RIMVGMVSWKKWDEMISNNSAEYSSWNILPIQN 633
R GM K+ D+++SN A+ ++W LP +N
Sbjct: 107 RTSSGMFLSKRQDDIVSNVEAKLAAWTFLPEEN 139
>At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 164
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 324 NVNNISSRMECHHCNCDEDTAEHSS 250
N +N +SRMEC CN D + +S
Sbjct: 139 NEHNFASRMECFRCNAPRDFSNRTS 163
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 366 YVESTIVCLQDKKINVNNISSRMECH--HCNCDEDTAEHSSHPTSAGRSVMASLCK 205
YVE T+ C Q++ N + +S + H C E + H G+S ++S+C+
Sbjct: 303 YVEVTLGCCQNRNDNTSQANSTFAVNLPHNQCPEPSVGSKDH--RKGQSDLSSVCE 356
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 348 VCLQDKKINVNNISSRMECHHCNCDEDTAEHSSHPTSAGRS 226
VC++D + +RM+C HC C+ EH + + G+S
Sbjct: 125 VCMEDLP---GDHMTRMDCGHCFCNNCWTEHFTVQINEGQS 162
>At3g03280.1 68416.m00325 expressed protein
Length = 166
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 599 SAELFEIISSHFFHDTIPTIIRSNYLEYCFDEPFSMGGSELLHAFRQTR 453
+AEL + S+F DT + ++ D+ +GG + AF TR
Sbjct: 36 AAELMMEMPSYFLVDTKSVKVGRKFIPLAADDDLDLGGCHVYVAFPMTR 84
>At2g39480.1 68415.m04845 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1407
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 632 FCIGNMFQEEYSAELFEIISSHFFH 558
FC GN E Y +L I+ FFH
Sbjct: 1033 FCAGNKVMELYRLQLQRILRQSFFH 1057
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,401
Number of Sequences: 28952
Number of extensions: 400288
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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