Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0395
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 61 1e-10
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 33 0.028
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 30 0.26
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.45
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.4
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.4
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 5.6
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.7
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +2
Query: 314 KXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 484
+ K+ +SW PD A +K KM+YSSS D L+++ G+ IQATD SE + E V EK+
Sbjct: 78 RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +3
Query: 66 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 245
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 246 ECRMA 260
+CR A
Sbjct: 61 DCRYA 65
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.5 bits (73), Expect = 0.028
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 308 SKKXKLFLMSWCPDTAKVKKKMLYSSS 388
SKK L L+S+ P+ A V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 28.7 bits (61), Expect = 0.79
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 320 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 472
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 436 SDRPLGSVSGGRRREAPRNRSPINTFTHELATKPNPLSDTPALTTRGHDTTS 591
S R S S G+R +N + NTF+H A+ + L+ P T + T+
Sbjct: 717 SQRSFNS-SNGKRSNVHKNNNASNTFSHSNASTSSSLNAAPNTTAKSSSQTA 767
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 296 TSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 475
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 476 EKL 484
E L
Sbjct: 138 EFL 140
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 463 GGRRREAPRNRSPINTFTHELATKPNPLSDTPALTTRGHDTTSR 594
G EA + + I HE+ T +P+S+ A+ D +S+
Sbjct: 751 GATVNEAAKTAATIEQNEHEIQTSVDPISNVKAILPNADDVSSK 794
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 386 SFDALKKSLVGVQKYIQATDLSEASQ 463
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 647 PVKSIILILFVCLCNNTKRLVVSWPRV 567
P ++II++++VC + K L +P+V
Sbjct: 401 PEENIIIVVYVCYSESIKALAYIFPKV 427
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 75 TVSDACKTTYEEIKKDKKHRYV 140
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 72 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 176
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,889
Number of Sequences: 5004
Number of extensions: 42772
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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