Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0395
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        52   4e-07
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   1e-05
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             37   0.017
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.21 
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)                 33   0.27 
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)                 33   0.27 
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         32   0.36 
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 29   4.5  
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)         29   4.5  
SB_16985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         26   4.6  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/62 (35%), Positives = 40/62 (64%)
 Frame = +2

Query: 302 EASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
           E + + KL L+ WCPD  ++K +M+ +++F  +KK   G  K ++  + SE S EA++E+
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALKEE 382

Query: 482 LR 487
           L+
Sbjct: 383 LK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 38/62 (61%)
 Frame = +2

Query: 302 EASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
           E +++ KL L+ WCPD   +K KM+ +++F  + K   G  K ++  D  + S EA++EK
Sbjct: 76  EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDRFDLSFEALKEK 135

Query: 482 LR 487
           L+
Sbjct: 136 LK 137


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 281 HQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 454
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 323 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 493
           L  +SWC D A ++KKM  +S+ D ++K        + A D  +   + +  K   T
Sbjct: 93  LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 176
           SG+ V D      + +K  K H+Y +F I DE  + V
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVV 40


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +2

Query: 323 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
           L  + WC D A +KK+M+ +++ + LK   V V+K  Q  D ++ + + + +K
Sbjct: 93  LVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +3

Query: 66  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 212
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 213 FLEDL 227
            LE L
Sbjct: 64  MLEKL 68


>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
 Frame = +1

Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRNRSP--INTFTHELA-TKPNPLSDTPALTTRG- 576
           P   ++V  S +P G    GR R   RN+S   INT ++E A T+P PL D+P L     
Sbjct: 171 PNHWAKVCRSTKPPGPTPRGRGRRGNRNKSKQQINTLSNENASTEPEPL-DSPQLYFHSL 229

Query: 577 -HDTTSRLV---LLQRQTNSIN 630
             D+ SR +   L+  Q NS N
Sbjct: 230 TIDSMSRQITQALVNIQVNSSN 251


>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +1

Query: 454 SVSGGRRREAPRNRSPINTFTH----ELATKPNPLS 549
           + +GGRRRE P  R+P+  F      E A KP+P++
Sbjct: 45  AAAGGRRREGPTARAPVGGFAEVGNAEFAEKPSPIT 80


>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
 Frame = +1

Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRNRSP--INTFTHELA-TKPNPLSDTPALTTRG- 576
           P   ++V  S +P G    GR R   RN+S   INT ++E A T P PL D+P L     
Sbjct: 79  PNHWAKVCRSTKPQGPTPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQLYFHSL 137

Query: 577 -HDTTSRLV---LLQRQTNSIN 630
             D+ SR +   L+  Q NS N
Sbjct: 138 TIDSMSRQITQALVNIQVNSSN 159


>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
          Length = 1238

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
 Frame = +1

Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRNRSP--INTFTHELA-TKPNPLSDTPALTTRG- 576
           P   ++V  S +P G    GR R   RN+S   INT ++E A T P PL D+P L     
Sbjct: 240 PNHWAKVCRSTKPQGPAPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQLYFHSL 298

Query: 577 -HDTTSRLV---LLQRQTNSIN 630
             D+ SR +   L+  Q NS N
Sbjct: 299 TIDSMSRQITQALVNIQVNSSN 320


>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
          Length = 1329

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
 Frame = +1

Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRNRSP--INTFTHELA-TKPNPLSDTPALTTRG- 576
           P   ++V  S +P G    GR R   RN+S   INT ++E A T P PL D+P L     
Sbjct: 240 PNHWAKVCRSTKPQGPTPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQLYFHSL 298

Query: 577 -HDTTSRLV---LLQRQTNSIN 630
             D+ SR +   L+  Q NS N
Sbjct: 299 TIDSMSRQITQALVNIQVNSSN 320


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 502 INTFTHELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRQTNSINMIDF 642
           +   T EL+  T+ NPL  TPAL++RG   T R+   + Q N+   IDF
Sbjct: 292 LENLTQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +1

Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRNRSP--INTFTHELA-TKPNPLSDTPALTTRG- 576
           P   ++V  S +P G    GR R    N+S   INT ++E A T P PL D+P L     
Sbjct: 253 PNHWAKVCRSTKPQGPTPRGRGRRGNWNKSKQQINTLSNENASTAPEPL-DSPQLYFHSL 311

Query: 577 -HDTTSRLV---LLQRQTNSIN 630
             D+ SR +   L+  Q NS N
Sbjct: 312 TIDSMSRQITQALVNIQVNSSN 333


>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 415 RSSEVHPSDRPLGSVSGGRRREAPRNRSPINTFTHELATKPNPLSDTPALTTR 573
           R  E+   +R L  +   +RRE    R+  N   HE  T+    S T A  TR
Sbjct: 519 RKDEIEEQNRTLRQLMEEKRREIEGLRAEANQLRHESKTREERESSTIAALTR 571


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 472 RREAPRNRSPINTFTHELATKPNPLSDTPALTT 570
           RRE P N S +N+  H  A+K +P    P+ ++
Sbjct: 95  RREIPSNASAVNSSLHRFASKVSPSPVMPSTSS 127


>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 472 RREAPRNRSPINTFTHELATKPNPLSDTPALTT 570
           RRE P N S +N+  H  A+K +P    P+ ++
Sbjct: 95  RREIPSNASAVNSSLHRFASKVSPSPVMPSTSS 127


>SB_16985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +1

Query: 385 LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRNRSPINTFTHELATKPNPLSDTPAL 564
           L R ++ +   S +   ++    S +  R+   P N  P+   T  L+T+    SDT   
Sbjct: 114 LYRVTQSLSTESRKASDTESRKASDTESRKVTLPSNVKPLYRATQSLSTESRKASDTE-- 171

Query: 565 TTRGHDTTSRLVLL 606
           + +  DT SR V L
Sbjct: 172 SRKASDTESRKVTL 185


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 26.2 bits (55), Expect(2) = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 400  EKVPCRSSEVHPSDRPLGSVSGGRRREAPRNR 495
            E +P R +E+H + RP     G +R E PR++
Sbjct: 1659 ESLPSRKNEIHGAQRP-----GAKRFEVPRDQ 1685



 Score = 20.6 bits (41), Expect(2) = 4.6
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +1

Query: 535  PNPLSDTPALTTRGHDTTSRLVLLQRQTNSINMIDFTGGRTS 660
            P P + T  LTT   D  +   +    T +      TG  TS
Sbjct: 1723 PGPCTTTATLTTTNTDIITSTAVATAYTTATLTTTSTGTLTS 1764


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,738
Number of Sequences: 59808
Number of extensions: 359773
Number of successful extensions: 1310
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)