Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0395
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       58   7e-09
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    58   7e-09
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       53   2e-07
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    53   2e-07
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    50   1e-06
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   2.9  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
 Frame = +3

Query: 60  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 233
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 234 -GGTGECRMA 260
                ECR A
Sbjct: 61  VEDGKECRYA 70



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +2

Query: 266 DFEYTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 439
           D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA
Sbjct: 73  DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131

Query: 440 TDLSEASQEAVEEKLRATDR 499
           +++S+  +++V+  L +  R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
 Frame = +3

Query: 60  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 233
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 234 -GGTGECRMA 260
                ECR A
Sbjct: 61  VEDGKECRYA 70



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +2

Query: 266 DFEYTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 439
           D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA
Sbjct: 73  DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131

Query: 440 TDLSEASQEAVEEKLRATDR 499
           +++S+  +++V+  L +  R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +2

Query: 260 LFDFEYTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 437 ATDLSEASQEAVEEKL 484
            +D SE S + +  KL
Sbjct: 143 VSDESEMSHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +2

Query: 260 LFDFEYTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 437 ATDLSEASQEAVEEKL 484
            +D SE S + +  KL
Sbjct: 143 VSDESEMSHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +2

Query: 260 LFDFEYTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 437 ATDLSEASQE 466
            +D SE S +
Sbjct: 143 VSDESEMSHK 152



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = +2

Query: 299 SEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAV 472
           S+ S+     L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  +++V
Sbjct: 144 SDESEMSHKELLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSV 202

Query: 473 EEKLRATDR 499
           +  L +  R
Sbjct: 203 KSDLMSNQR 211



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 218 RGSAEGRYRGMQNGLFDFE-YTHQCQGTSEASKKXKLFLMSWCPDTAKVKKKMLY 379
           R    G+Y G +    +   + H   G+ E      +F  S  PD+ K KKK+LY
Sbjct: 141 RPKVNGKYEGAEEYPDELAVFIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 287 CQGTSEASKKXKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 466
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 467 AVEEK 481
            +E K
Sbjct: 133 LLESK 137


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 424 EVHPSDRPLGSVSGGRRREAPRNRSPINTFTHELATKPNPLSDTP 558
           E  PS+ P+    G ++ EAP + +P+   T + +TKP+    +P
Sbjct: 23  EPQPSEPPVKRARGAKKNEAP-STAPMPPKTTKKSTKPSRKQGSP 66


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 353 RCPGTTTSGRAXVSC*PPTCPGTGACI 273
           RC   TT   A V C    CP   ACI
Sbjct: 320 RCSAGTTCQEALVKCAKAPCPSHAACI 346


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 353 RCPGTTTSGRAXVSC*PPTCPGTGACI 273
           RC   TT   A V C    CP   ACI
Sbjct: 385 RCSAGTTCQEALVKCAKAPCPSHAACI 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,989
Number of Sequences: 27780
Number of extensions: 261030
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)