Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0394
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 3e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 75 1e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 4e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 3e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 6e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 49 8e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 4e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 7e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 44 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 4e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 9e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 9e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 42 9e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 7e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.001
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.011
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.014
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.019
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.056
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.056
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.7
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 6.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 6.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99 bits (238), Expect = 3e-22
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 677 HTSYVRNTCVF 709
+S +RNTCV+
Sbjct: 220 KSSRIRNTCVY 230
Score = 99.5 bits (237), Expect = 4e-22
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +3
Query: 255 LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 434
L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLV 509
+G++ PTPIQ Q WP+AMSG+++V
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/71 (46%), Positives = 48/71 (67%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ GVAKTGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 677 HTSYVRNTCVF 709
+R C +
Sbjct: 516 KLLNIRACCAY 526
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 434
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLV 509
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.5 bits (155), Expect = 4e-12
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 655
K+ G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 45.6 bits (103), Expect = 7e-06
Identities = 17/59 (28%), Positives = 37/59 (62%)
Frame = +3
Query: 333 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 664
A+TGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 677 HTSYVRNTCV 706
+ +R+ +
Sbjct: 164 KGTDLRSVAI 173
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 661
K+ A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 360 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 673
++ G+A+TGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAI 137
Query: 674 GHTSYVRNTCV 706
G + VR+ +
Sbjct: 138 GGSIGVRSVVI 148
Score = 31.9 bits (69), Expect = 0.099
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.4 bits (110), Expect = 1e-06
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Frame = +3
Query: 378 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAKRWP---T 548
PI F+E + +++G+K YKEPTPIQA WP ++G+++V + K
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 549 SCQPLCT*TTNRLFGEVMVRLLWSWRLPES*HNKFSKLLQILDTHLMFVTRVCFGGAPKR 728
+ Q L + N+ V+V + + L + + L+Q T+L V V +GGAPK
Sbjct: 223 ALQYLNGLSDNKSVPRVLV-VSPTRELAIQTYENLNSLIQ--GTNLKAV--VVYGGAPKS 277
Query: 729 EQAR 740
EQAR
Sbjct: 278 EQAR 281
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
++ G+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G AKTGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 45 AVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/56 (50%), Positives = 32/56 (57%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
G AKTGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 49 GGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 7e-06
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
++ G AKTGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
K+ G A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 348 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 39.9 bits (89), Expect = 4e-04
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 637
++ A+TGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 638 LAQQIQQVAADFGHTSYVRNTCVF 709
L QI + + F + S+VR V+
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVY 290
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AKTG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
++ A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.9 bits (94), Expect = 9e-05
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 658
G A TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 164 GKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
G +++G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G +
Sbjct: 158 GQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTE 212
Query: 689 VR 694
V+
Sbjct: 213 VK 214
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.1 bits (87), Expect = 7e-04
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 440 GLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 619
G +R A + ++ A++G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 620 LAPTRELAQQIQQVAADFGHTSYVR-NTCV 706
LAPTRELAQQIQ+V G V + C+
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACI 122
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
AK G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 88 AKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA+SG++++A K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 652
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 324 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 503
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 504 LVA 512
++A
Sbjct: 61 VIA 63
Score = 33.9 bits (74), Expect = 0.024
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYV 691
A++G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 65 AQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQ 119
Query: 692 RNTCV 706
+ C+
Sbjct: 120 CHACI 124
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.019
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
D+G + + S + + AK+G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 614 -LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFW 712
LVL TRELA QI+ A F T VF+
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 155
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.056
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.056
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -1
Query: 231 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 85
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 84 IPVT 73
PV+
Sbjct: 198 APVS 201
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +1
Query: 523 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 675
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 246 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 103
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -3
Query: 178 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 20
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 87 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 7
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 646
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 441 PLSLHLVAHNQENL--LLQSIE 382
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,893
Number of Sequences: 5004
Number of extensions: 63589
Number of successful extensions: 234
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -