Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0394
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 102 3e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 94 1e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 94 1e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 80 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 79 3e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 4e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 68 6e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 6e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 64 9e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 5e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 60 2e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 9e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 50 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 2e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 50 2e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 49 3e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 7e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 48 7e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 47 2e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 47 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 47 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 46 3e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 45 6e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 6e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 8e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 1e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 1e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 2e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 40 0.001
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 40 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.012
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.028
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.028
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.037
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.037
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.065
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 35 0.065
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.065
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 34 0.11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.15
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.26
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 32 0.46
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 0.46
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 32 0.46
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 30 1.4
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 2.4
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 4.3
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.7
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.7
At2g25460.1 68415.m03049 expressed protein 28 5.7
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C... 28 7.5
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 27 9.9
At5g43990.2 68418.m05382 SET domain-containing protein identical... 27 9.9
At5g43990.1 68418.m05383 SET domain-containing protein identical... 27 9.9
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ... 27 9.9
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ... 27 9.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.9
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 27 9.9
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 27 9.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 27 9.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 102 bits (244), Expect = 3e-22
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 SPR-LGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 407
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 408 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 101 bits (243), Expect = 4e-22
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 677 HTSYVRNTCVF 709
+S ++ TC++
Sbjct: 197 SSSKIKTTCIY 207
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/92 (42%), Positives = 60/92 (65%)
Frame = +3
Query: 234 PRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 413
P+ F L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 414 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 677 HTSYVRNTCVF 709
S VR+TC++
Sbjct: 263 LRSGVRSTCIY 273
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/92 (42%), Positives = 60/92 (65%)
Frame = +3
Query: 234 PRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 413
P+ F L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 414 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 677 HTSYVRNTCVF 709
S VR+TC++
Sbjct: 263 LRSGVRSTCIY 273
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 571 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG 630
Query: 689 VRNTCVF 709
+R V+
Sbjct: 631 IRCVPVY 637
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 437
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 438 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 437
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+AKTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 677 HTSYVRNTCVF 709
+R + V+
Sbjct: 326 KAYGLRVSAVY 336
Score = 72.1 bits (169), Expect = 4e-13
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 437
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVF 709
+S + TC++
Sbjct: 255 RSSRISCTCLY 265
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVF 709
+S + TC++
Sbjct: 255 RSSRISCTCLY 265
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVF 709
+S + TC++
Sbjct: 255 RSSRISCTCLY 265
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 677 HTSYVRNTCVF 709
+S + TC++
Sbjct: 532 RSSRISCTCLY 542
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 267 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 434
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLVA 512
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 667
++ G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 668 DFGHTSYVRNTCV 706
F H R T +
Sbjct: 411 KFAHYLGFRVTSI 423
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +3
Query: 330 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 677 HTSYVRNTCVF 709
+S + C++
Sbjct: 326 KSSKISCACLY 336
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 429 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 324 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 413
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVA 664
++ G+AKTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 665 ADFGHTSYVRNTCVF 709
+ G +++ CV+
Sbjct: 212 REAGEPCGLKSICVY 226
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 318 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 491
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 492 SGKNLV 509
G++L+
Sbjct: 150 DGRDLI 155
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGD 601
KD G+ L ++ G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 602 GPIALVLAPTRELAQQIQQVAADF 673
GPIALV+ P+RELA+Q V F
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQF 196
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +3
Query: 243 GFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 422
G + +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 423 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAA 667
++ G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 668 DF 673
F
Sbjct: 244 QF 245
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/89 (28%), Positives = 47/89 (52%)
Frame = +3
Query: 243 GFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 422
G + +P + P + K S + + R + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 423 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+K G +PTPIQ QG P+ ++G++++
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 679
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP- 607
KD G + + L K+ AKTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 608 --IALVLAPTRELAQQ 649
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 658
++ G A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 425 RCKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRR--- 595
+ K NG++ +S + G A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 596 --GDGPIALVLAPTRELAQQIQQVAADF 673
G P LVL PTRELA +QVAADF
Sbjct: 170 GYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 607
K G+++ + L + ++ G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 608 IALVLAPTRELAQQIQQ 658
LVLAPTRELA+Q+++
Sbjct: 192 QCLVLAPTRELARQVEK 208
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 662 AADFGHTSYVR 694
A F + + V+
Sbjct: 257 AKKFSYQTGVK 267
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 431
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 432 KTMGYKEPTPIQAQGWPIAMSGKNLVA 512
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 662 AADFGHTSYVR 694
A F + + V+
Sbjct: 244 ARKFSYQTGVK 254
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 261 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 437
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLVA 512
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAI-VHINNQPPIRRGDGP 607
K+ G Q + + K+ G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 608 IALVLAPTRELAQQIQQVAAD 670
+V+ PTRELA Q + VA +
Sbjct: 164 -VIVICPTRELAIQTKNVAEE 183
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD--G 604
KD G + + L K+ AKTG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 605 PI-ALVLAPTRELAQQ 649
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 685
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 686 YVRNTCV 706
R+ V
Sbjct: 217 RFRSILV 223
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 662 AADFGHTSYVR 694
A F + + V+
Sbjct: 249 AKKFSYQTGVK 259
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 348 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 662 AADFGHTSYVR 694
A F + + V+
Sbjct: 249 AKKFSYQTGVK 259
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 348 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 610
K+ G R + + + ++ G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 611 ALVLAPTRELAQQIQQVAAD 670
LV+ PTRELA Q VA +
Sbjct: 229 VLVICPTRELAIQSYGVAKE 248
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 437
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 652
K+ AKTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 318 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 497
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 498 KNLVA 512
K++VA
Sbjct: 84 KDVVA 88
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 607
CK+ G+++ + + ++ G+A+TGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 608 IALVLAPTRELAQQIQQ 658
ALV+ PTRELA Q+ +
Sbjct: 128 FALVVTPTRELAFQLAE 144
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGH 679
AKTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--S 203
Query: 680 TSYVRNTCVF 709
Y+ CV+
Sbjct: 204 APYLSTVCVY 213
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
K+ AKTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 682
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/66 (34%), Positives = 41/66 (62%)
Frame = +2
Query: 452 TDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 631
TD S++ + + ++ G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 632 RELAQQ 649
RELA Q
Sbjct: 153 RELAAQ 158
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 351 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 607
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 608 IALVLAPTRELAQQIQQV 661
L+L PTRELA QI +
Sbjct: 240 RVLILTPTRELAVQIHSM 257
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 667
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 668 DFG 676
G
Sbjct: 208 MLG 210
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 309 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 482
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 483 IAMSGKNLVA 512
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 667
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 668 DFG 676
G
Sbjct: 71 MLG 73
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 333 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 500
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 501 NLVA 512
A
Sbjct: 180 ECFA 183
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
+A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +
Sbjct: 71 MARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 692 R 694
R
Sbjct: 128 R 128
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 604
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 605 PIALVLAPTRELAQQI 652
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +2
Query: 494 WKEFSGVAKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 664
+K+ + A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 665 ADFGHT 682
F T
Sbjct: 111 QPFVST 116
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 604
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 605 PIALVLAPTRELAQQI 652
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 614 LVLAPTRELAQQIQQVAADFG 676
+++ PTRELA Q QV + G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 614 LVLAPTRELAQQIQQVAADFG 676
+++ PTRELA Q QV + G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI-----NNQPPIR 592
C+ G + + L + K+ G+A+TGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 593 RGDGP--IALVLAPTRELAQQIQQ 658
R P A VL+PTRELA QI +
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAE 107
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 366 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 661
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
A+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 518 KTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 652
++GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.9 bits (79), Expect = 0.028
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
K A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
AK G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 34.7 bits (76), Expect = 0.065
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Frame = +2
Query: 485 SYVWKEFSGVAKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 619
+Y K+ G A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 620 LAPTRELAQQIQQ 658
+ PTRELA Q+ +
Sbjct: 285 ITPTRELALQVTE 297
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 706
ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 142
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 378 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 515 AKTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTS 685
A++G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 66 AQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTN 118
Query: 686 YVRNTCV 706
+ C+
Sbjct: 119 IQAHACI 125
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 706
ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFG 676
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 652
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN----QPPIRRG 598
+D+G R + + K+ A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 599 DGP-----IALVLAPTRELAQQI 652
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -2
Query: 719 STTKTHTCYEHKMCVQNLQQLAEFVVLTLW*APRPKQSDHHLSE*AVGCLCAQWLARCR- 543
ST K + K+ + L + LTL+ K + HL L W+ +C
Sbjct: 356 STDKALGIFTCKITITGDHHLCH-LSLTLFLIYLLKMTKTHLGAKKPSRLILSWITKCHF 414
Query: 542 PTFCRNPFWLR 510
FC NP W+R
Sbjct: 415 QMFCGNPMWIR 425
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 706
AL+L+PTRELA Q ++ G H + + C+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 201 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 22
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 651 ICCANSLVGAKTKAIGPSPLRI 586
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 148 EKNYRRICCLLQIWNHRFHGYY 83
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
|C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
[Arabidopsis thaliana]
Length = 865
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 308 SFENCRMWIIKVFVERLEETESQS 237
SFEN R IKV E+LEE S S
Sbjct: 144 SFENLREEEIKVMTEKLEEASSSS 167
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 410 RKICFFKVLNRIMNLNATYSYLVIISVLFDFIW*SFENCRMWIIKVFVERLEETESQSGR 231
+K+ K N + L YS L+ I + FEN R I F+E+L E+ S R
Sbjct: 203 KKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTR 262
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 228 ASPRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 407
ASP LG L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 408 PDYVQQGVKTM 440
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 228 ASPRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 407
ASP LG L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 408 PDYVQQGVKTM 440
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 383
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSG 532
N R + SSSR++++Y ++FS +TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 406
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSG 532
N R + SSSR++++Y ++FS +TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 279 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 455
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 456 TPIQAQGWPIAMS 494
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 279 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 455
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 456 TPIQAQGWPIAMS 494
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 279 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 455
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 456 TPIQAQGWPIAMS 494
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 240 LGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 413
L FCF+Q +NF +P+ + +E Y N H+ T + + + + PD
Sbjct: 299 LVFCFVQSRRRNFLSAYPSSAGKE--RIESY-NYHQSTNKNNKPAESVNHTRRGSMPD 353
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +3
Query: 270 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 449
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 450 EPTPIQAQGWPIAMSGKNLVA*PKRVPAKRW 542
T + Q W +L+ + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +3
Query: 270 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 449
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 450 EPTPIQAQGWPIAMSGKNLVA*PKRVPAKRW 542
T + Q W +L+ + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,763
Number of Sequences: 28952
Number of extensions: 335378
Number of successful extensions: 1172
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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